Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0222 ATGAGCATGTATTCGGTATCAGCGTTGTGCAAGCCCCTAGCGAGTAATTTCCAACCGGCACTCACGATGGAGTCCTTGTCGTTGTTCCGCCACCGCAACAAGGAAAAGGTTGTCGTAATCATGGGCGCAACGGGCACAGGGAAGTCAAAGCTAGCCATAGACCTGGCCACGCATTTCCCACCAGCGGAGATAGTCAACTCGGATAAAATACAAGTGTACGAAGGCTTAGACATCACCACAAACAAGGTCACCGAACGGGAGTGTCGCGGGGTCCCACACCATCTCTTGGGCACGGTGGATCCTAACACCAATTTCAGTGCCAACGACTTTTGCGACCACGCGACTGTGGCCATTGGGTCCATCTTGGGGAGGGATGCTTTACCCATCATTGCGGGTGGGTCCAACTCCTTCCTCGACGCGCTGGTCAACCATTACCCCGAGTTTCGGTTAAGGTACGAGTGCTGCTTCCTCTGGGTCGACGTCTCACTCCCCGTGCTCCATTCCTCTCTCTCCGCACGTGTAGATCGCATGATCCGCGCCGGCCAAGTCGAGGAGGTTCGACAATTCTTCCAAAAGGAAAAGGACTACGCGAGAGGGATACGAAGGGCCGTTGGCGTTCCTGAATTTCATGATTTCTTCAGAGCCGAAGCCGACAAAGCCGATGAGAGGACCAAGCAGCGGCTCCTCGAGGCTGCCATTGCCGCCGTCAAAATCAACAACTGCAACCTCTCCAACCGACAGCTCCACAAGATTCACCGCCTTCACGGCATTTGGAAACGGAACATGCACCGCCTCGACGCCACCGAGGTTTTCCTCAAGAGTTCTCGCCACGAGGCAGAGCAAGCGTGGCAGGATCACGTGCTCGCCAAGAGTCAAAGGATTCTCCATAAGTTCCTCTACGAGGACACGCATGTTCCCGCCGGTATTGCTTCCGTTATTGCTTCTTCGCCGCCGGCCAtggccgccgccgccgccgccgcaaCACACTAG 990 0.5394 MSMYSVSALCKPLASNFQPALTMESLSLFRHRNKEKVVVIMGATGTGKSKLAIDLATHFPPAEIVNSDKIQVYEGLDITTNKVTERECRGVPHHLLGTVDPNTNFSANDFCDHATVAIGSILGRDALPIIAGGSNSFLDALVNHYPEFRLRYECCFLWVDVSLPVLHSSLSARVDRMIRAGQVEEVRQFFQKEKDYARGIRRAVGVPEFHDFFRAEADKADERTKQRLLEAAIAAVKINNCNLSNRQLHKIHRLHGIWKRNMHRLDATEVFLKSSRHEAEQAWQDHVLAKSQRILHKFLYEDTHVPAGIASVIASSPPAMAAAAAAATH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0222 329 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 163 262 - -
Ssu6g0222 329 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 194 IPR027417 -
Ssu6g0222 329 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 26 304 IPR039657 -
Ssu6g0222 329 Gene3D - 34 299 IPR027417 -
Ssu6g0222 329 Pfam IPP transferase 150 249 - -
Ssu6g0222 329 Pfam IPP transferase 71 147 - -
Ssu6g0222 329 ProSiteProfiles Guanylate kinase-like domain profile. 35 123 IPR008144 -
Ssu6g0222 329 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 26 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0222 Ssu-Chr6 3511407 3512396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0222 151 303 C2H2 Transcription Factor Family AT2G27760 30.168 3.57e-17 80.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0222 K10760 - gmx:100778430 488.804
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0222 6 3511407 3512396 Ssu6g0222 6 3511407 3512396 ECH
Ssu6g0222 6 3511407 3512396 Ssu1g0837 1 18493924 18494910 PCT