Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0218 ATGGCTACTAGCATTTCTGTGTTACCTAGTGGCTCAAAGATAGCAATAAATCTCAATTCAAGCATGCACCATGTTGCCAAGCGAAGTTTCTATaacacaaaaacatatattgcTTGGAAGTTGGTGATCAAGAACAAGAAGCAGTTCAAGTCCCTCATGGGGAAAGTGCAAGGTTTTAGCCTTCTATCTTTTGGTGGCTGCTTTGATAGTTGTCGTGATCACACTCGAGGCTCTGGATACGGGACGAGGATATGGAACCTCAGTGATAGGCCAGTGGAGCTGCAAATAAGGGTGGGATCAATACTGAAGAAGATTCACACGTTGAAGCCAGGGTCTTCCAAAAGACTGAAGTGTAAAAGCATATATAAGGCATATATGCCTGGAAGGAGTGGCAGTGTTGGTGGGAGCTTGAAGAGTTTATTGTATTACTATGATGAAACTTGCCACCCTTATATTTGGATTCATGACATCGGGTGTCATTCCTTAAGGATGGCTAAGCAGCAGTATGTTAGCCTCGAGGATCTCAGGGATTCTTCTGAGATCAAAATCTTCTGGGATCATCAGAGAGGTTCTATATCAaagaagaagaaacactTACTTTCATCCTCCACCTCCACATCTCCCACCCCCTTACTATTACCCTCCACCTCCGCCGCCACTTctgccgccgccgccgccgccacaAGGTTACTTTGTTACCTCAACCAACCCTTGTGCTTCTACCACCGGCTACGTGGGTcatctcctcctcctcctcctcagtATTACCCAAATGGCTACACTGCCAATTCCGTCATGCTTCATCATCAGCACCAGCCCTTGTATGCAAATCAGGGTGGAAGTGGAATTCATGCTTCACCCCCACCCTACGTTGATCATCAAACCACTAAGAAGATAAGGAACGATGTCAATTTGCATAAACACACTCTGCGCCTCTCCCTCGATCCTAACCATCCAGATCACCACTTGATTTCCTTTGATTTCGATGCCCTCTATGATGGCAGCATTACAATCTTCTACTTagccaaagaagaagaaaaatgtagGTTTATTCCACTATTTCCTGATGTGTTTGAGCCAATCACATTCCCTTTTCAAAAAGGAGCTGGCCAGAAATTTTGCCAGCCTTCAGGAACGGGCATTGACCTAGGTTTCTTTGAGTTGGATGATCTTTCTAGGCCCTCGCCCGGAGAAGATGTATTTCCCCTTGTCATATGTGCTGAAACAAGTTTAAGAACTCCTTTGGCAGACGAAACTACTAGTAATTCCGTACTAGATGCATCCCCTCACATGCAAATAACTCAAGCTATCTTAGAGAAAAGCAATGGAAGTTCAACAGCAGCAGATTTTGATGATAATGATCCTGGGAAGGAGTGCGTAATATGCATGACTGAACCCAAGGACACTGCTGTCTTACCCTGCCGACATATGTGTATGTGTGGTGAGTGTGCCAATGCTTTGCGGTTACAATCAAATAAATGCCCTATATGTCGTCAACCAATTGAGGAACTTATAGAGATCAAGATAAACAATGGCAATCAATGA 1545 0.4117 MATSISVLPSGSKIAINLNSSMHHVAKRSFYNTKTYIAWKLVIKNKKQFKSLMGKVQGFSLLSFGGCFDSCRDHTRGSGYGTRIWNLSDRPVELQIRVGSILKKIHTLKPGSSKRLKCKSIYKAYMPGRSGSVGGSLKSLLYYYDETCHPYIWIHDIGCHSLRMAKQQYVSLEDLRDSSEIKIFWDHQRGSISKKKKHLLSSSTSTSPTPLLLPSTSAATSAAAAAATRLLCYLNQPLCFYHRLRGSSPPPPPQYYPNGYTANSVMLHHQHQPLYANQGGSGIHASPPPYVDHQTTKKIRNDVNLHKHTLRLSLDPNHPDHHLISFDFDALYDGSITIFYLAKEEEKCRFIPLFPDVFEPITFPFQKGAGQKFCQPSGTGIDLGFFELDDLSRPSPGEDVFPLVICAETSLRTPLADETTSNSVLDASPHMQITQAILEKSNGSSTAADFDDNDPGKECVICMTEPKDTAVLPCRHMCMCGECANALRLQSNKCPICRQPIEELIEIKINNGNQ 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0218 514 SUPERFAMILY RING/U-box 452 504 - -
Ssu6g0218 514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 436 508 IPR013083 -
Ssu6g0218 514 Pfam Zinc finger, C3HC4 type (RING finger) 457 503 - -
Ssu6g0218 514 PANTHER MAHOGUNIN 443 514 IPR045194 GO:0061630
Ssu6g0218 514 PANTHER MAHOGUNIN 249 443 IPR045194 GO:0061630
Ssu6g0218 514 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 443 514 - -
Ssu6g0218 514 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 249 443 - -
Ssu6g0218 514 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 458 498 IPR045195 -
Ssu6g0218 514 ProSiteProfiles Zinc finger RING-type profile. 459 498 IPR001841 -
Ssu6g0218 514 SMART ring_2 459 497 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0218 Ssu-Chr6 3416076 3423662 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0218 290 514 C3H Transcription Factor Family AT3G06140 54.118 7.58e-85 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0218 - - vun:114177610 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0218 6 3416076 3423662 Ssu6g0218 6 3416076 3423662 ECH
Ssu6g0218 6 3416076 3423662 Ssu1g0840 1 18617895 18618377 PCT