Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0216 ATGACCACCTCAGCGGCTACGGAACAATTTGACAAATGCATGAAGAAACAAGTAGAAGCAATTTCAAGGGTTTTGCATTCAATTCAGTCCTACAAAGAGGACAATATTCCGTGCAAAATCGACGAGGGTCTCTATTTGGGTTCGATTGCCACTGCAGCTAACAAGGTTGCTTTGAAAAACTATAATATCACTCACATTTTGACTGTGGCTGGTAGAATACCACCTGCACATCCTGCGGATTttgtctataaaattataaacgTTGTTGACAGAGATGAGGAAGACTTAAAACAATACTTCAATGAGTGTTTTGATTTTATCGATGAAGCCAAAAGACACGGTGGAGGTGTTTTGATTCACTGTTTTGCTGGAAGATCAAGGAGTGTGACTATAGTTGTGGCATATCTGATGAAGACTCGTGGAATGAGCTTTTTTGAGGCTTTGAAACATGTAAGGAGCATACGACCAGTAGCAGGTCCCAATCACGGTTTCATTTGTCAGCTGAAGGACTTTGAAAAGTCTCTTCAAGGTGCCCCTAAATTGCATTAG 549 0.3989 MTTSAATEQFDKCMKKQVEAISRVLHSIQSYKEDNIPCKIDEGLYLGSIATAANKVALKNYNITHILTVAGRIPPAHPADFVYKIINVVDRDEEDLKQYFNECFDFIDEAKRHGGGVLIHCFAGRSRSVTIVVAYLMKTRGMSFFEALKHVRSIRPVAGPNHGFICQLKDFEKSLQGAPKLH 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0216 182 SMART dsp_5 36 174 IPR020422 GO:0006470|GO:0008138
Ssu6g0216 182 Pfam Dual specificity phosphatase, catalytic domain 44 173 IPR000340 GO:0008138|GO:0016311
Ssu6g0216 182 CDD DSP 37 170 - -
Ssu6g0216 182 Gene3D Protein tyrosine phosphatase superfamily 28 180 IPR029021 -
Ssu6g0216 182 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 98 156 IPR000387 GO:0016311|GO:0016791
Ssu6g0216 182 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 34 178 IPR029021 -
Ssu6g0216 182 ProSiteProfiles Dual specificity protein phosphatase domain profile. 36 177 IPR020422 GO:0006470|GO:0008138
Ssu6g0216 182 PANTHER BNAA01G23680D PROTEIN 11 178 - -
Ssu6g0216 182 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 11 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0216 Ssu-Chr6 3350363 3353841 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0216 39 177 Protein tyrosine phosphatase (PTP) family AT3G06110 61.871 2.58e-58 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0216 - - gmx:100306342 334.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0216 6 3350363 3353841 Ssu6g0216 6 3350363 3353841 ECH