Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0205 ATGGCAAATTTcacctcttccttttcttctcccttACCTCCACTTATGTCACACATTTCAACTCCGTCATCTTCTGCGGCTTTCGACGACAGTTCCGAGGACGCCTGCAGCATATGTCTAGAGCCATTCAGCACCCATGACCCCGCCACCATTACCTGTTGCAAACATGAATATCATCTGCATTGTATTCTTGAGTGgTCACAGAGAAGCAAAGAATGCCCAATATGTTGGCAGTTACTTATCTTGAAAGACCCTGCcagCCAAGAGCTTCTAACTGCAGTGGCGGCTGAAAAACGCTTACACTCAAGACCTGTACATTCACATGCATTCACTAATTCTCGGAGGCCCCATGAACGGCTTAACAATGACCATGATGATTCTTGTTCAGATGACTCTGATTTTGATGAACAACTCATGCAGCACCTAGTTACTGCTGCAAGTAGAGCTCGTTATATCTGCAGACGGGAAAGGCAGAGATCCGCTGGAGCAGGTCCTTCAGAGGTTCTTGTTTTTAACCCATCTATGCATGCCTCGGGGATGCAACCAACACTTACAACTTCACCATCTGGTGGTAGTTCACCAACTTCTGGTGTACCTTCTGCTGCTCCCAATCAACCTCCTACTTCTTCTGAGAGTGACGTGTCTTCCAATCCAAGAGTTATCTATAGCCAGCCATCACCTGAGAGTGCGGAGAGGCTAAACACTTCTGAGATGTTCTTCTTTCCTGAGTCCatcaaatccaaactttctGCTGCTTCAGCCAGATGTAAggaatcaatttcaaaaaatactcGTGGTCTTAAAGAGAAGTTAGTTGCACGTAATGTCTCGGTGAAAGAGCTGAGTAAAGGTGTTCAGCGTGAGATGAATGCAGGCATTGCTGGCGTTGCACGAATGATTGAACGCCTTGATCTTACCTCAAAACGGTCCTTATCTCCTCTCATCTCTGTAAAAGGGAAATCTGTCCAAGAGAATGGTATTGAGCAGTTTCCTAATGAAGAAGAGAGTGGAGTTTTGATTGGCAATGTTACTTCAAATGCCTCTTCACTTGATTCTAGCTTGGTTGCTGTTGGAGTGGAAATTCCTCCATGTGTTCAGGTTTACTTCATACATTTAATCCTTAGTATTGtactttga 1137 0.4222 MANFTSSFSSPLPPLMSHISTPSSSAAFDDSSEDACSICLEPFSTHDPATITCCKHEYHLHCILEWSQRSKECPICWQLLILKDPASQELLTAVAAEKRLHSRPVHSHAFTNSRRPHERLNNDHDDSCSDDSDFDEQLMQHLVTAASRARYICRRERQRSAGAGPSEVLVFNPSMHASGMQPTLTTSPSGGSSPTSGVPSAAPNQPPTSSESDVSSNPRVIYSQPSPESAERLNTSEMFFFPESIKSKLSAASARCKESISKNTRGLKEKLVARNVSVKELSKGVQREMNAGIAGVARMIERLDLTSKRSLSPLISVKGKSVQENGIEQFPNEEESGVLIGNVTSNASSLDSSLVAVGVEIPPCVQVYFIHLILSIVL 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0205 378 Pfam Ring finger domain 35 76 IPR001841 -
Ssu6g0205 378 ProSiteProfiles Zinc finger RING-type profile. 36 76 IPR001841 -
Ssu6g0205 378 MobiDBLite consensus disorder prediction 176 230 - -
Ssu6g0205 378 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 327 - -
Ssu6g0205 378 MobiDBLite consensus disorder prediction 105 132 - -
Ssu6g0205 378 SMART ring_2 36 76 IPR001841 -
Ssu6g0205 378 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHF1A 1 327 - -
Ssu6g0205 378 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 107 IPR013083 -
Ssu6g0205 378 SUPERFAMILY RING/U-box 29 83 - -
Ssu6g0205 378 MobiDBLite consensus disorder prediction 111 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0205 Ssu-Chr6 3220911 3223404 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0205 12 84 C3H Transcription Factor Family AT4G00335 39.726 1.34e-12 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0205 K19043 - gmx:100785684 542.347
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0205 6 3220911 3223404 Ssu6g0205 6 3220911 3223404 ECH