Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0204 ATGGACACCAACACACTCACACCGTTGTCGCCTCTTCCTACTTGGGGTGTTCTGTCATCTGAAAAGCCAACTTCTACTTGTTCCATCCTTCGTTCACAAAACCATTTTCTCAAACTCTCCTCCTCAACCACTAACCTTAATCGCACCTTCAAGTTCAGAACTCCACAAGCCATTCTAAATCCTTCTCCCACAGCCACTTCAGCGGTGACCACTCCCACTCTCAGAGAAATATGCCAAACGCATGTTCCTGACCATATATTGCAAAGgcaatttcaaaacatttcctctttttttttttctgcattgTTTTGTGCTCAGAatttgataatatgtttcagGATGGAAGAGATTGGATATGCAATGCCTACAGATATCCAGAGGGAAGCATTGCCTTACCTTTTTTCCGGGCGTGATTGCATACTTCATGCTCAGACAGGTTCTGGGAAGACACTCACATACCTGCTTTTGATCCATTCCATCATCAATGCTGGAAAATCCTCTGTGCAAGCCCTAGTTTTGGTCCCCACTCGTGAACTTGGCATGCAAGTCACTAAGGTTGCTAGGACATTGGCTGCAAAGCCAACTGGAGTCGATGGGGAGCAGAAGTCATGTTCCATCATGGCTCTGCTAGATGGAGGAACACTGAAAAGACACAAGAGTTGGTTAAAGGCAGAGCCTCCAACAGTAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATATTTTTTCGCTTGAAACTGTGCGGGTGCTGATTGTTGATGAGGTTGACTGCATTTTCAATTCTTCAAAGCAAGTGAGTTCTCTTCGAAAGATTTTGACTTCATATTCATCTTGCAATAGCCGTCAGACAGTCTTTGCCAGTGCATCTATACCACAGCACAACCGATTTATTCATGACTCTGTGCAGCAGAAATGGACAAAGAGAGATGTGGTCCATATTCACGTCAGTGCAGTGGAGCCCATGCCATCTCGCCTATATCATAGATTTATAATATGTGAtaccaaaagaaaattacaaaccctGCTATCCTTGATACAATCTGATGCACCTGAGTCTGGCATTATATTTGTTGCTGAGCAGTCTGAGAAGTCAAAAAAGGCTGGAAATGCTCCATCATCATCCCTTCTGATTGACTTTTTGAAAACATCATACCAAGGTGATTTAGATATCCTCCTCCTTGAAgacaaaatgaatttcaattcaCGAGCCGCTTCACTGTTGGAGGTTAGAAAAGGAGGTGGCTATCTTCTTATAGCAACAGATATAGCTGCTAGGGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCCATAGATTATCTTCATCGAGCAGGGAGAACTTGTAGAAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATAGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTAACTGTGAAGAGCTTATTCCATAA 1497 0.4055 MDTNTLTPLSPLPTWGVLSSEKPTSTCSILRSQNHFLKLSSSTTNLNRTFKFRTPQAILNPSPTATSAVTTPTLREICQTHVPDHILQRQFQNISSFFFSALFCAQNLIICFRMEEIGYAMPTDIQREALPYLFSGRDCILHAQTGSGKTLTYLLLIHSIINAGKSSVQALVLVPTRELGMQVTKVARTLAAKPTGVDGEQKSCSIMALLDGGTLKRHKSWLKAEPPTVVVATVGSLCQMLERHIFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSYSSCNSRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRLYHRFIICDTKRKLQTLLSLIQSDAPESGIIFVAEQSEKSKKAGNAPSSSLLIDFLKTSYQGDLDILLLEDKMNFNSRAASLLEVRKGGGYLLIATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFNCEELIP 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0204 498 Pfam Helicase conserved C-terminal domain 341 460 IPR001650 -
Ssu6g0204 498 CDD DEADc 114 296 - -
Ssu6g0204 498 Gene3D - 70 310 IPR027417 -
Ssu6g0204 498 SMART ultradead3 118 333 IPR014001 -
Ssu6g0204 498 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 58, CHLOROPLASTIC 44 497 - -
Ssu6g0204 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 131 464 IPR027417 -
Ssu6g0204 498 SMART helicmild6 378 462 IPR001650 -
Ssu6g0204 498 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 44 497 - -
Ssu6g0204 498 Pfam DEAD/DEAH box helicase 123 296 IPR011545 GO:0003676|GO:0005524
Ssu6g0204 498 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 130 312 IPR014001 -
Ssu6g0204 498 CDD SF2_C_DEAD 331 460 - -
Ssu6g0204 498 Gene3D - 326 497 IPR027417 -
Ssu6g0204 498 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 341 498 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0204 Ssu-Chr6 3210223 3215385 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0204 118 497 Eukaryotic Initiation Factors Gene Family AT1G72730 28.792 7.71e-29 116
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0204 - - gmx:100786205 820.846
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0204 6 3210223 3215385 Ssu6g0204 6 3210223 3215385 ECH