Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0202 ATGATATCCTTAGTGAAGTACACAGCATGGCCTCTGAGCACCCCTGTTTCCTCAAGGCCTCAACTCTGCACGTTACCCGCTATTCACAATGTCCAACAAAGCACCGAACCCTCTATCTCTTCCCTCAAACCTCTTTACATTTCATCCACTGAGAACTTCACATTGTCAGCAAAACTCAGAAAGAGGGGTACAGAGTGCCGTGCCTATGAAGCAGATAGGTCACAGCCACTGGAGATTAACATTGACATTCCTGATGAACAGACAGAGATAGAGGAAGCTCAGAGGCTCAAAATTGGTTTGTATTTTGCCACCTGGTGGGCTTTGAATGTGGTCTTCAACATATACAACAAGAAGGTTCTGAATGCTTTTCCTTACCCGTGGCTTACTTCCACTTTGTCCCTTGCTGCTGGCTCTCTCATGATGTTAATCTCATGGGCCACCAGGGTTGCTGATGTCCCAAAAGTTGATTTGGAGTTCTGGAAGGCCCTCTTTCCTGTTGCGGTGGCACACACAATTGGGCATGTTGCAGCTACCGTGAGTATGTCCAAAGTTGCAGTTTCATTTACCCACATCATCAAGAGTGGTGAGCCTGCATTCAGTGTCCTGGTATCAAGGTTCTTGCTAGGGGAAGCATTCCCTGTGCAGGTTTACCTGTCACTGGTGCCAATTATTGGAGGATGTGCACTTGCTGCTGTGACGGAGCTCAATTTCAATATGATTGGGTTTATGGGGGCTATGATATCCAATTTGGCCTTTGTCTTTCGGAATATATTCTCAAAGAAGGGTATGAAAGGGATGTCTGTTAGTGGAATGAATTACTATGCTTGCCTTTCCATATTGTCTCTATTGATTCTCACGCCTTTTGCCATTGCTGTGGAGGGCCCAAAGATGTGGGCTGCAGGCTGGCAAACGGCCTTGTCCCAGATTGGTCCCAAATTTGTCTGgTGGGTAGCTGCCCAGAGTGTCTTCTACCACTTGTACAATCAAGTCTCTTACATGTCTCTTGATCAGATTTCTCCCTTAACATTTAGCATAGGGAACACAATGAAGAGAATTTCGGTAATTGTCTCTTCCATCCTTATCTTCCACACGCCAATTCAGCCAGTCAATGGCCTTGGGGCAGCCATTGCAATTCTTGGTACCTTCCTCTATTCACAGGCTAAACAGTAA 1170 0.4598 MISLVKYTAWPLSTPVSSRPQLCTLPAIHNVQQSTEPSISSLKPLYISSTENFTLSAKLRKRGTECRAYEADRSQPLEINIDIPDEQTEIEEAQRLKIGLYFATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLAAGSLMMLISWATRVADVPKVDLEFWKALFPVAVAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVLVSRFLLGEAFPVQVYLSLVPIIGGCALAAVTELNFNMIGFMGAMISNLAFVFRNIFSKKGMKGMSVSGMNYYACLSILSLLILTPFAIAVEGPKMWAAGWQTALSQIGPKFVWWVAAQSVFYHLYNQVSYMSLDQISPLTFSIGNTMKRISVIVSSILIFHTPIQPVNGLGAAIAILGTFLYSQAKQ 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0202 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 138 232 - -
Ssu6g0202 389 PANTHER SOLUTE CARRIER FAMILY 35 35 389 - -
Ssu6g0202 389 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 96 388 IPR004696 GO:0016021|GO:0022857|GO:0055085
Ssu6g0202 389 Pfam Triose-phosphate Transporter family 96 385 IPR004853 -
Ssu6g0202 389 SUPERFAMILY Multidrug resistance efflux transporter EmrE 288 386 - -
Ssu6g0202 389 PANTHER GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC-LIKE 35 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0202 Ssu-Chr6 3184853 3187518 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0202 22 389 Antiporters AT1G61800 79.620 0.0 583
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0202 K15283 K05350 gmx:100820126 676.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0202 6 3184853 3187518 Ssu1g0862 1 19116748 19119442 PCT