Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0192 atgataaaatctaaCGGTGCTTTCCGACCATTCGCTACGCCAACACACAGCAATGGATTGGGACGAACCTCCCTCTCCCTATCCCCCCATTCTTCCTCGCTTCTGAAGGACATCTCCAACTTCACAACGCCCAGACGCCCCCCCTTCTCCCTCACCGCGCAGTCTCCCTCCACCCAATTCTTCACCGCCTCCAAACACACCTCCTCCTCCTTCCGCCGCCGCCCCATCAAATCAGCCGCCGCCGCCAAGAAGCTCAAGGCCTTCCAATTGGAGCAGTCGCAGTCCTCCCGAAAGGCCCAAATCAAGAAGGAGCAGTCCCTCAAATCCCTTGCCAAGTCCCTCTCCGTTTGGCTCAACTTCTTGCTCCAAGACCCTACCTCCTGCGGCTGCCACTTCTCCGCCGCCGATGCCGCTCCGGCCACCAACGGTAAGCGAGACGGCGCCGCCCCGGGAATATCCGTCGGCGTTGATTCCACGTGGCGAACTCCCAAGCGCCAGAGGAAGACGTGGTCTGCTAAGGAAAGTGCCGCGGCGGAGGTTCCTGATTCCTCATTTTCGAACCTGAGGGATTCTCTGAAGGATGTCTGCAGTTTCGATGATTTGAAGCAGCGAATGAGGGTTTATCTCAGCCTCGCAGCTTGTAAAGAGATCTTCCAACAAATGAATCGCGTCACCAAGACAATTGATGAAGGCAGGCTGAATATGAAGGCGCACTGCCCTATAGTAACTGATGTTGGGTTGAAAGATAAGGCCGCGAGAATCCTCATGTGTTATAGTCCAATTTGGCTGCGAAttggattatatataatttttggcggTGACTCCTTGGTGTTAAATGGTGATATTCATTCTGATCTCGATGTTGTGTTCTTGAGAATGGTCATTGACAAACTATTTTTTTCCCACGAGGGTCTAGCTAAAGCATATGCTTATAACAAGATGGTTGAAGGCGTGTATAGGTCGGGTTACTACGAGAATTTGGGCAATGTGATTTTGAAGAGAATTTTGTTGCTTGTGCTTGTCCTGGATAAAGCTAAATGCCAGAGTTACCTCCCACTGGAGTATGGTATTGATGGATTAGATGGAGGTTCCCCTTTATTATTCAAACCAGAATCCTGGATTAAATCAAGTAGTCAGCTGATTCATGaatttttatcgTCTGATGTAATGCACGGAGAAGGCAATCTTCTAACACATTTGGTGATTTTAGGTTACAAATTATCTCATCAACAGGAACCTCTTGTCGAGTATGATTTCAGGGTCAGAGATTTATTTGTAGATCTCCAAGATGGATTAAAATTGTGTAGAGCTGTTCAGCTCTTGCAGCATAATTCTTCGATCCTCATGAAAATAGTAGTTCCCCCTGATACTTCTAAGAAAAAATTGGCAAACTGTGGCCTTGCCCTACAATATGTTAGGCAAGCTGGTGGGTCACTACTTGATCAAGATGGCATCATGATTGTGGCAGATGATATTGTTAATGGAGACAAAGAACTTACACTTTCCTTGCTATGGAATATGTTTGTTCATTTGCAGATACCTCTTTTGGTTGATAAAACAAGTTTAGTTGGCGAAATTTCTAAAATTCGAGGATTTGGCACGGATCTCATAAACAATGCGAATTCTAGTTCTCTGGAATTGCTTTTGAATTGGATTCAGgATCACTTAAATTTCCATAAGCTTTTGGGTTGTGACTGCCAAAGTCTGAACCGTAGATATTTGAGGGTGGTACGGTGCCTTTCAAATTCTGAATCAGTACAAAAGCCTGATGCTCTTGATGTGCACGACAATGAAGatgcTGCAAGAAAATTCAAGGCCATCCAAGCTTGGTGGCAAGATATGGCTGAAAGAAACCGTACCAACAAACAAGCTGTCTCTAATTTGCAGAGCTCCAGAACCACTGAATGCAGCACCAACATTAGAAGAGAAAATGCTGCAAGAACAATACAACTGCATTTCAGAGGATATGTTGTACGGCACAAGTTTCTGAAGATGGTAAATGCAGTTACCCTTTTGCAAACTGTTTTTAGAGCTTGGCTAAAAGTGAGGCAAGAGTCAGTCTGCATGatattatctactgttcaagaCTGTGACTCTTCATGTGGTGATATGGTGGCAGCTGCTATTACTGTTCAGAAATTTGTCCGTGGTTTGATGGCACGATCTAGATATATTCATCAACTAGATCAGAAAGAGAAAGCTTTAAAATTTTCCCAAGAGAAAGTCACTTTTGATCTTCAAACAAATGCAGCCATTATCATTCAGATTGCTTGGATAAAGTTCATATGCTGCAGGTCTACTCGGAAGCAACACCTTTTTGCAACTAAAATTCAACGAAATTTCCGTAGGTGGTTGATGAGAAAAAGTTTTTTAGATCAGATTCAAGCTGTCATAAAAATTCAATCTTATTTTCGAATGTGGAGATGTGTAAATGCTTTTCAGCACTTCAAAATTGAGTTTAAGGCAGCTGTTGTCATTCAATCTTTCTTACGGGGATGGTTTGCACGAAAGGATGATTGTGTGCGCAGGAATCACATTGTTGAAATTCAAAGACATTGCCGTGGTTGGCTTGTGAAACGGGACTTCTTGTTCCAAAGAGACGCTGTAGTAAAGATCCAGTGTGTCATTCGAAGCTTGAAGTGCCAGAAGGCTCTCAATTGCCAGAAAGATGCTGCTTTGGAGATCCAGCGCTTTATAAGGGGGAATTTAACTCGGAATCAGCTATTAGGTAGTGCTTCCAAGTCACGCACAGTCATTCCTGTTAGTTGCATTTCAAGACCATTTGGCTTTTGTAGTTTTCAACTGGAACTATTCTTGTTTTCGGTTGTGAAATTGCAACAATGGTGGAAGGGTCTCTTGTTGcgtaaattaatgaataagtcgGCCATCACTATTCAGTCATGTGCCCGTGGGTGGATAGCCAAGCGAAAGGCTACTGTTTACAGACACCTTGTCATCCAAGAAGAAGCCGCGTTGGTGATCCAACGCTATATTAGGGGGCATTTAACTCGAAACCGGATATTAgTAGGTGGTGCTTCTAACCTAAGTGCAGTTGTTCCTGCTGGCTGCATTTCAAGACCAGTTGGGTGTCGTAGTTTTCAACTGGAACTTTATTTGCTTTCAGTTGTGAAATTGCAACGATGGTGGAAGGATCTCTTGTTACAGAAATTGATGACAAAGTCTGCCATTGTTATTCAGTCTTGTACTCGTGGGTGGATAGCCAGGCGAAAGGCCACTGTTCAAAGACATCGTATTATTTTCATCCAATCCCACTGGAAAGGTTACCTTGCACGTAAAGAGTCAAAAGAGCAGTTAATGGATTTGCGCTTGAGAATGCAAAAGTCTGCCAGAAATGTGGATGACAGCAAGCGTCTCATAAACAGACTCTTGGCCGCGCTTTCAGAGCTACTTAATATGAAGAGTCTTAGTAACATCCTTCATACTTGTTCAACATTGGATATGGCTACAGAACATTCTCAGAAATGCTGTGAAGAACTTGTGGCTGCAGGGGCTATCGATACTTTGCTGCGGCTAATTCAAACAGTCAGCCGGAGTATACCTGATCAGGAGGTTCTAAAGCATGCTTTGTCAACTCTCCGAAATCTCGCCCGCTATCCTCATCTACTTCAAGTGTTGATCCAAAGTCGTGGTTCTGTACAGATAATCGTCTTGGAGTTACTGAGGAATAAAAACGAAGGCTACTTCGTTGCTTCTGAACTTTTGAAGAAGATATGTTCAACTCGTATAGGCGTTGAGACGATATTCAAGTCCCCTGCCCTGCTGAAACGACTGCACGGTCTTGTTGAGGACCTTACCCGAAAGGGAATTTACGAGAAAAGAAATCCTAGGGCTCCTAGCCCGGCTATCAAAGAAAACAGAGAGAGAAGATTGAAGGAGGCTGCTGAGATTCTAAAGCTGATAACAAGCGCCtga 3933 0.4322 MIKSNGAFRPFATPTHSNGLGRTSLSLSPHSSSLLKDISNFTTPRRPPFSLTAQSPSTQFFTASKHTSSSFRRRPIKSAAAAKKLKAFQLEQSQSSRKAQIKKEQSLKSLAKSLSVWLNFLLQDPTSCGCHFSAADAAPATNGKRDGAAPGISVGVDSTWRTPKRQRKTWSAKESAAAEVPDSSFSNLRDSLKDVCSFDDLKQRMRVYLSLAACKEIFQQMNRVTKTIDEGRLNMKAHCPIVTDVGLKDKAARILMCYSPIWLRIGLYIIFGGDSLVLNGDIHSDLDVVFLRMVIDKLFFSHEGLAKAYAYNKMVEGVYRSGYYENLGNVILKRILLLVLVLDKAKCQSYLPLEYGIDGLDGGSPLLFKPESWIKSSSQLIHEFLSSDVMHGEGNLLTHLVILGYKLSHQQEPLVEYDFRVRDLFVDLQDGLKLCRAVQLLQHNSSILMKIVVPPDTSKKKLANCGLALQYVRQAGGSLLDQDGIMIVADDIVNGDKELTLSLLWNMFVHLQIPLLVDKTSLVGEISKIRGFGTDLINNANSSSLELLLNWIQDHLNFHKLLGCDCQSLNRRYLRVVRCLSNSESVQKPDALDVHDNEDAARKFKAIQAWWQDMAERNRTNKQAVSNLQSSRTTECSTNIRRENAARTIQLHFRGYVVRHKFLKMVNAVTLLQTVFRAWLKVRQESVCMILSTVQDCDSSCGDMVAAAITVQKFVRGLMARSRYIHQLDQKEKALKFSQEKVTFDLQTNAAIIIQIAWIKFICCRSTRKQHLFATKIQRNFRRWLMRKSFLDQIQAVIKIQSYFRMWRCVNAFQHFKIEFKAAVVIQSFLRGWFARKDDCVRRNHIVEIQRHCRGWLVKRDFLFQRDAVVKIQCVIRSLKCQKALNCQKDAALEIQRFIRGNLTRNQLLGSASKSRTVIPVSCISRPFGFCSFQLELFLFSVVKLQQWWKGLLLRKLMNKSAITIQSCARGWIAKRKATVYRHLVIQEEAALVIQRYIRGHLTRNRILVGGASNLSAVVPAGCISRPVGCRSFQLELYLLSVVKLQRWWKDLLLQKLMTKSAIVIQSCTRGWIARRKATVQRHRIIFIQSHWKGYLARKESKEQLMDLRLRMQKSARNVDDSKRLINRLLAALSELLNMKSLSNILHTCSTLDMATEHSQKCCEELVAAGAIDTLLRLIQTVSRSIPDQEVLKHALSTLRNLARYPHLLQVLIQSRGSVQIIVLELLRNKNEGYFVASELLKKICSTRIGVETIFKSPALLKRLHGLVEDLTRKGIYEKRNPRAPSPAIKENRERRLKEAAEILKLITSA 1310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0192 1310 MobiDBLite consensus disorder prediction 10 25 - -
Ssu6g0192 1310 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 25 553 - -
Ssu6g0192 1310 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 1023 1309 - -
Ssu6g0192 1310 SMART arm_5 1159 1204 IPR000225 GO:0005515
Ssu6g0192 1310 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 1170 1217 IPR000225 GO:0005515
Ssu6g0192 1310 PANTHER UNCHARACTERIZED 1023 1309 - -
Ssu6g0192 1310 Gene3D - 406 513 IPR036872 -
Ssu6g0192 1310 SMART iq_5 841 863 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 1057 1079 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 1080 1102 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 818 840 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 641 663 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 864 886 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 703 725 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 769 791 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 986 1008 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 792 814 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 887 909 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 664 687 IPR000048 GO:0005515
Ssu6g0192 1310 SMART iq_5 957 979 IPR000048 GO:0005515
Ssu6g0192 1310 ProSiteProfiles IQ motif profile. 704 733 IPR000048 GO:0005515
Ssu6g0192 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 741 838 IPR027417 -
Ssu6g0192 1310 ProSiteProfiles IQ motif profile. 888 917 IPR000048 GO:0005515
Ssu6g0192 1310 ProSiteProfiles IQ motif profile. 642 670 IPR000048 GO:0005515
Ssu6g0192 1310 ProSiteProfiles IQ motif profile. 842 871 IPR000048 GO:0005515
Ssu6g0192 1310 SUPERFAMILY ARM repeat 1127 1271 IPR016024 -
Ssu6g0192 1310 ProSiteProfiles IQ motif profile. 958 987 IPR000048 GO:0005515
Ssu6g0192 1310 ProSiteProfiles IQ motif profile. 819 848 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam IQ calmodulin-binding motif 846 862 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam IQ calmodulin-binding motif 960 977 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam IQ calmodulin-binding motif 890 908 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam IQ calmodulin-binding motif 644 662 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam IQ calmodulin-binding motif 821 837 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam IQ calmodulin-binding motif 706 724 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam IQ calmodulin-binding motif 1059 1077 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam IQ calmodulin-binding motif 1084 1100 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam IQ calmodulin-binding motif 989 1006 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam IQ calmodulin-binding motif 774 790 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam IQ calmodulin-binding motif 795 813 IPR000048 GO:0005515
Ssu6g0192 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1042 1106 IPR027417 -
Ssu6g0192 1310 MobiDBLite consensus disorder prediction 1 25 - -
Ssu6g0192 1310 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 554 689 - -
Ssu6g0192 1310 PANTHER UNCHARACTERIZED 554 689 - -
Ssu6g0192 1310 Gene3D - 1108 1278 IPR011989 -
Ssu6g0192 1310 ProSiteProfiles IQ motif profile. 987 1016 IPR000048 GO:0005515
Ssu6g0192 1310 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 896 IPR027417 -
Ssu6g0192 1310 Coils Coil 1098 1118 - -
Ssu6g0192 1310 Gene3D - 866 916 - -
Ssu6g0192 1310 Gene3D - 1055 1106 - -
Ssu6g0192 1310 Gene3D - 957 1009 - -
Ssu6g0192 1310 Gene3D - 641 689 - -
Ssu6g0192 1310 Gene3D - 767 819 - -
Ssu6g0192 1310 Gene3D - 820 865 - -
Ssu6g0192 1310 ProSiteProfiles IQ motif profile. 1058 1085 IPR000048 GO:0005515
Ssu6g0192 1310 SUPERFAMILY Calponin-homology domain, CH-domain 336 560 IPR036872 -
Ssu6g0192 1310 PANTHER UNCHARACTERIZED 702 1005 - -
Ssu6g0192 1310 PANTHER UNCHARACTERIZED 25 553 - -
Ssu6g0192 1310 Pfam Calponin homology (CH) domain 420 512 IPR001715 GO:0005515
Ssu6g0192 1310 ProSiteProfiles IQ motif profile. 1081 1109 IPR000048 GO:0005515
Ssu6g0192 1310 ProSiteProfiles IQ motif profile. 770 799 IPR000048 GO:0005515
Ssu6g0192 1310 Pfam Armadillo/beta-catenin-like repeat 1159 1204 IPR000225 GO:0005515
Ssu6g0192 1310 PANTHER ABNORMAL SPINDLE MICROTUBULE ASSEMBLY 702 1005 - -
Ssu6g0192 1310 ProSiteProfiles Calponin homology (CH) domain profile. 390 512 IPR001715 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0192 Ssu-Chr6 3078080 3088798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0192 821 975 Myosins gene family AT5G43900 26.875 3.97e-06 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0192 K16743 - psom:113304813 995.342