Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0191 ATGATGCAGCCTGGACCTGGCATGGCCCAACAGCCCAACCAGCAATACCcacagcagcagcagcagcagcagcagcagcaaccCTACATGATGATGCCGCCGCAGCCTCAGCCCCCTCCGATGTGGGCCCCATCGGCCCAGCCTCCGCCCCAATCGGTGGCTCCTCCGCAGCCCACCAGCGCCGATGAGGTCCGCACCCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAAAACTATCTCTACACGTGTTTCGCACACACCGGCGAGGTGGCCTCAGTTAAAGTCATTCGGAACAAACAGACTAGTCAATCAGAGGGATACGGATTTATTGAGTTTACTAGTCGTGCTGGTGCTGAGAGAGTCCTTCAAACGTACAATGGCACCATTATGCCAAATGGTGGGCAGAACTTCAGATTGAATTGGGCAACTTTTAGTGTGGGTGAGAGGCGTCATGATGACAGCCCTGATCACACCATATTTGTTGGAGACCTGGCGGCAGATGTTACGGATTATCTTCTGCAAGAGACATTTCGGGCACGATATTCCTCGGTTAAGGGGGCCAAGGTTGTAATTGATAGGCTCACTGGCCGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGAGCTATGACTGAAATGCAAGGGGTTCTTTGCTCAACAAGGCCCATGAGAATTGGACCGGCCTCTAATAAAAACCCTAGCACTCAGTCTCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGTGGCACAGAACGAGAATGATCCAAATAATACAACCATTTTTGTTGGCAATTTGGATCCTAATGTCACAGATGACCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGTTAGTTCACGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCCGACAGGAGCTGTGCAGAAGAGGCACTGCGGGTTTTAAATGGCACACTTTTAGGGGGACAAAATGTTCGGCTTTCATGGGGCCGAAGTCCTTCAAACAAACAGGCTCAACCAGATCCAAACCAGTGGAATGGTAGTGGATATTATGGATATGCTCAGGGTTATGAAAATTATGGCTATGCTCCTGCTGGACAGGACCCTAATATGTATGGCAGTTATCCTGGCTATGCAAATTACCAACCTCCTCAGCAACAGCAGCAAATGGGATATAGCTAA 1200 0.4767 MMQPGPGMAQQPNQQYPQQQQQQQQQQPYMMMPPQPQPPPMWAPSAQPPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERVLQTYNGTIMPNGGQNFRLNWATFSVGERRHDDSPDHTIFVGDLAADVTDYLLQETFRARYSSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGVAQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDPNQWNGSGYYGYAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQMGYS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0191 399 MobiDBLite consensus disorder prediction 1 30 - -
Ssu6g0191 399 SUPERFAMILY RNA-binding domain, RBD 250 362 IPR035979 GO:0003676
Ssu6g0191 399 MobiDBLite consensus disorder prediction 229 262 - -
Ssu6g0191 399 MobiDBLite consensus disorder prediction 31 56 - -
Ssu6g0191 399 MobiDBLite consensus disorder prediction 232 262 - -
Ssu6g0191 399 Gene3D - 149 245 IPR012677 -
Ssu6g0191 399 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 19 396 - -
Ssu6g0191 399 CDD RRM1_SECp43_like 66 146 - -
Ssu6g0191 399 MobiDBLite consensus disorder prediction 1 60 - -
Ssu6g0191 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 132 IPR000504 GO:0003723
Ssu6g0191 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 268 331 IPR000504 GO:0003723
Ssu6g0191 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 160 223 IPR000504 GO:0003723
Ssu6g0191 399 SUPERFAMILY RNA-binding domain, RBD 27 146 IPR035979 GO:0003676
Ssu6g0191 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 145 IPR000504 GO:0003723
Ssu6g0191 399 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45B 19 396 - -
Ssu6g0191 399 Gene3D - 6 148 IPR012677 -
Ssu6g0191 399 CDD RRM2_SECp43_like 157 236 - -
Ssu6g0191 399 SUPERFAMILY RNA-binding domain, RBD 151 245 IPR035979 GO:0003676
Ssu6g0191 399 SMART rrm1_1 267 334 IPR000504 GO:0003723
Ssu6g0191 399 SMART rrm1_1 159 233 IPR000504 GO:0003723
Ssu6g0191 399 SMART rrm1_1 66 141 IPR000504 GO:0003723
Ssu6g0191 399 MobiDBLite consensus disorder prediction 385 399 - -
Ssu6g0191 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 266 338 IPR000504 GO:0003723
Ssu6g0191 399 MobiDBLite consensus disorder prediction 379 399 - -
Ssu6g0191 399 Gene3D - 246 347 IPR012677 -
Ssu6g0191 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 158 237 IPR000504 GO:0003723
Ssu6g0191 399 CDD RRM3_NGR1_NAM8_like 265 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0191 Ssu-Chr6 3061206 3064901 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0191 64 345 Eukaryotic Initiation Factors Gene Family AT2G23350 27.526 1.77e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0191 - - gmx:100796848 675.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0191 6 3061206 3064901 Ssu1g0874 1 19291667 19295561 PCT