Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0188 ATGGGTTGTCACGGtagcaaggaaaaaaaatcaaagtcagAATTCAGTAGTAGCTATGGATCAGCGGCCACTGGTAGTGGTAGTGCTGGTTACAACACTGTTCAGCCACCCTCTACGAGTACTAATACTCAGGTTCAGGCATCAGCAGCGAAACCACAGTCAGAGGCTCCGAAACCCCAGAATGTAAAGGCGGTGCAGAAACCAGAAACAACCATTCTTGGGAAACCCTTTGACGATATAAAGAAGTACTACACTCTGGGCAAGGAATTGGGAAGGGGGCAATTTGGGATCACGTATCTGTGCACCGAGAATTCGAGCGGTCGCACTTACGCGTGCAAGTCGATTCTGAAGCGGAAGCTGGTTTCGAGGGCCGACAGGGAGGACATGAAGAGGGAGATTCAGATCATGCAGCATTTGTCGGGGCAACCCAACATCGTGGAGTTCAAGGGTGCGTACGAGGACAGGTTCTCCGTGCACCTCGTCATGGAACTCTGCGCCGGAGGGGAGCTCTTCGACCGAATCATCGCGCAGGGTCACTATTCCGAGAGAGCCGCCGCGTCGCTTTGCCGAACCATTGTTAACGTTGTGCACATTTGTCACTTCATGGGTGTCATGCACCGCGATCTCAAGCCCGAGAATTTCTTGCTTTCTAGCAAGGACGAGGGGGCAACGCTCAAGGCTACtgattttggtctctctgtCTTCATTGAAGAAGGGAAGGTTTACCATGATATGGTTGGCAGTGCTTACTATGTTGCTCCTGAAGTATTGCGTCGTAGTTATGGAAAGGAAATAGATATTTGGAGTGCAGGCATCATATTGTATATTCTTCTGAGTGGTGTACCACCTTTTTGGGCTGAAACTGAAAAGGGAATATTTAATGCCATATTGGAaggtgaaattgattttgtaagtGAACCATGGCCATCCATATCAGACAGTGCTAAAGATCTTGTCAGGAAGATGCTGACACAGGATCCAAAGAAGCGGATTACTTCTGCTCAAGTTCTTGAACACCCATGGATGAGAGAAGGTGGAGAGGCATCTGATAAACCCATCGATAGTGCAGTTCTATCCAGAATGAAACAATTCAGGGCAATGAATAAGCTTAAGAAGCTAGCATTGAAGGTTATTGCTGAAAATCTATCAGAAGAGGAGATTAAAGGTCTTAAAGCAATGTTTGCAAATATGGATACTGACAATAATGGCACCATCACCTATGAAGAACTGAAGACTGGCTTGGCTCGAATTGGATCACGACTGTCTGAGGCTGAAGTGAAGCAACTCATGGAAGCTGCTGATGTTGATGGAAATGGGTCAATTGACTATATTGAATTCATCTCGGCTACAATGCATAGGCACAGACTTGAACGGGATGAACATCTTTACAAAGCATTCCAGTATTTTGATAAGGATAACAGTGGGTATATTACTAGAGATGAATTGGAGACTGCTATGACCCAACATGGAATGGGTGATGAAGCAACAATAAAGGAAATAATCTCTGAGGTGGATACAGATAATGATGGGAGAATAAACTATGAGGAATTCTGTGCAATGATGAGAAGCGGAATGCCACACCAGGGACAGCTATTTTAA 1599 0.4415 MGCHGSKEKKSKSEFSSSYGSAATGSGSAGYNTVQPPSTSTNTQVQASAAKPQSEAPKPQNVKAVQKPETTILGKPFDDIKKYYTLGKELGRGQFGITYLCTENSSGRTYACKSILKRKLVSRADREDMKREIQIMQHLSGQPNIVEFKGAYEDRFSVHLVMELCAGGELFDRIIAQGHYSERAAASLCRTIVNVVHICHFMGVMHRDLKPENFLLSSKDEGATLKATDFGLSVFIEEGKVYHDMVGSAYYVAPEVLRRSYGKEIDIWSAGIILYILLSGVPPFWAETEKGIFNAILEGEIDFVSEPWPSISDSAKDLVRKMLTQDPKKRITSAQVLEHPWMREGGEASDKPIDSAVLSRMKQFRAMNKLKKLALKVIAENLSEEEIKGLKAMFANMDTDNNGTITYEELKTGLARIGSRLSEAEVKQLMEAADVDGNGSIDYIEFISATMHRHRLERDEHLYKAFQYFDKDNSGYITRDELETAMTQHGMGDEATIKEIISEVDTDNDGRINYEEFCAMMRSGMPHQGQLF 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0188 532 CDD EFh_PI-PLC 390 523 - -
Ssu6g0188 532 MobiDBLite consensus disorder prediction 15 55 - -
Ssu6g0188 532 ProSiteProfiles EF-hand calcium-binding domain profile. 421 456 IPR002048 GO:0005509
Ssu6g0188 532 SUPERFAMILY Protein kinase-like (PK-like) 82 350 IPR011009 -
Ssu6g0188 532 ProSiteProfiles Protein kinase domain profile. 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0188 532 CDD STKc_CAMK 84 341 - -
Ssu6g0188 532 ProSitePatterns EF-hand calcium-binding domain. 470 482 IPR018247 -
Ssu6g0188 532 PANTHER SERINE/THREONINE-PROTEIN KINASE 45 526 - -
Ssu6g0188 532 ProSitePatterns EF-hand calcium-binding domain. 505 517 IPR018247 -
Ssu6g0188 532 ProSiteProfiles EF-hand calcium-binding domain profile. 457 492 IPR002048 GO:0005509
Ssu6g0188 532 ProSitePatterns EF-hand calcium-binding domain. 434 446 IPR018247 -
Ssu6g0188 532 ProSiteProfiles EF-hand calcium-binding domain profile. 493 527 IPR002048 GO:0005509
Ssu6g0188 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Ssu6g0188 532 CDD EFh 464 522 IPR002048 GO:0005509
Ssu6g0188 532 Pfam EF-hand domain pair 390 450 IPR002048 GO:0005509
Ssu6g0188 532 Pfam EF-hand domain pair 460 522 IPR002048 GO:0005509
Ssu6g0188 532 Pfam Protein kinase domain 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0188 532 ProSiteProfiles EF-hand calcium-binding domain profile. 385 420 IPR002048 GO:0005509
Ssu6g0188 532 ProSitePatterns EF-hand calcium-binding domain. 398 410 IPR018247 -
Ssu6g0188 532 Gene3D Phosphorylase Kinase; domain 1 86 169 - -
Ssu6g0188 532 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 21-RELATED 45 526 - -
Ssu6g0188 532 MobiDBLite consensus disorder prediction 1 69 - -
Ssu6g0188 532 Gene3D - 350 524 - -
Ssu6g0188 532 SUPERFAMILY EF-hand 381 521 IPR011992 -
Ssu6g0188 532 ProSitePatterns Protein kinases ATP-binding region signature. 90 117 IPR017441 GO:0005524
Ssu6g0188 532 Gene3D Transferase(Phosphotransferase) domain 1 170 349 - -
Ssu6g0188 532 SMART efh_1 389 417 IPR002048 GO:0005509
Ssu6g0188 532 SMART efh_1 496 524 IPR002048 GO:0005509
Ssu6g0188 532 SMART efh_1 461 489 IPR002048 GO:0005509
Ssu6g0188 532 SMART efh_1 425 453 IPR002048 GO:0005509
Ssu6g0188 532 SMART serkin_6 84 342 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0188 Ssu-Chr6 2949252 2953491 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0188 1 532 EF-hand Containing Proteins AT4G04720 75.275 0.0 841
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu6g0188 Pkinase 3.5e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0188 K13412 - gmx:100816859 939.873