Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0173 ATGGCTGACTTGTTGGAATGGCCAAAGAAAGATAAGCGCCGCTTGCTTCATGTCGTCTACCGTGTTGGTGACCTTGATCGCACCATCAAGTTTTATACAGAATGTTTTGGCATGAAGCTTTTGAGGCAAAGAGATATCCCGGAGGAGAAATACGCCAATGCTTTTCTTGGATTTGGCCCAGAAGAATCCCATTTTGTTGTCGAATTAACATATAATTATGGGGTGACCTCATATGACATTGGAGATGGCTTTGGACATTTTGCAATAGCAACTCAAGATATTTACAAATTGGTTGAACACATCCGGGCCAAGGGTGGAAACATCACTAGGGAGCCTGGTCCAGTTCAGGGTGGGACTACTGTTATCGCCTTTGTGAAGGATCCTGATGGTTACACTTTTGGACTCGTCCAAAGACCTACAATCCACGACCCATTTTGTCAAGTAATGCTCCGTGTTGGCGATTTAGAGCGCtcaattaagttttatgaaaagGCTTTGGGCATGAAGGTGGTGAGGAAGGTTGATAAGCCTGAGTACAAGTACACTATAGCTATGCTCGGGTATGGAGAGGAGCACGAGACAACTGTGTTGGAGTTGACATATAACTATGGTATCACTGAATACTCTAAGGGAAATGCTTATGCACAGATTGCTATTGGTACTGATGATGTATACAAGAGTGCTGAGGTAGTTAACCAAGTCATACAAGAGGTTGGAGGGAAGATTACTCGGCAACCAGGGCCAATTCCTGGCCTTAATACAAAAATCACTGCGTTTTTAGATCCAGATGGATGGAAAACTGTCTTGGTTGACAACGGTGATTTCTTGGAGGAACTGAAGTGA 843 0.4318 MADLLEWPKKDKRRLLHVVYRVGDLDRTIKFYTECFGMKLLRQRDIPEEKYANAFLGFGPEESHFVVELTYNYGVTSYDIGDGFGHFAIATQDIYKLVEHIRAKGGNITREPGPVQGGTTVIAFVKDPDGYTFGLVQRPTIHDPFCQVMLRVGDLERSIKFYEKALGMKVVRKVDKPEYKYTIAMLGYGEEHETTVLELTYNYGITEYSKGNAYAQIAIGTDDVYKSAEVVNQVIQEVGGKITRQPGPIPGLNTKITAFLDPDGWKTVLVDNGDFLEELK 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0173 280 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 144 272 IPR037523 -
Ssu6g0173 280 ProSitePatterns Glyoxalase I signature 1. 17 38 IPR018146 GO:0004462|GO:0046872
Ssu6g0173 280 CDD GlxI_Ni 15 136 - -
Ssu6g0173 280 PANTHER LACTOYLGLUTATHIONE LYASE 4 280 - -
Ssu6g0173 280 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 13 144 IPR029068 -
Ssu6g0173 280 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 147 266 IPR004360 -
Ssu6g0173 280 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 15 133 IPR004360 -
Ssu6g0173 280 ProSitePatterns Glyoxalase I signature 1. 147 168 IPR018146 GO:0004462|GO:0046872
Ssu6g0173 280 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 14 138 IPR037523 -
Ssu6g0173 280 Gene3D - 141 280 IPR029068 -
Ssu6g0173 280 TIGRFAM glyox_I: lactoylglutathione lyase 3 146 IPR004361 GO:0004462|GO:0046872
Ssu6g0173 280 TIGRFAM glyox_I: lactoylglutathione lyase 146 275 IPR004361 GO:0004462|GO:0046872
Ssu6g0173 280 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 4 280 - -
Ssu6g0173 280 Gene3D - 1 138 IPR029068 -
Ssu6g0173 280 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 145 272 IPR029068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0173 Ssu-Chr6 2771361 2774375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0173 147 271 Calmodulin-binding Proteins AT1G08110 28.667 7.15e-11 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0173 K01759 - gmx:100793089 557.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0173 6 2771361 2774375 Ssu1g0897 1 19854792 19855446 PCT