Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0162 ATGTTCCCCACTTTAGGATTCCCAGTCAACCTTAGCCGCCCCACCACTGCTCTCTCACCGCCCTCTGATCACAATCGGACGGTCCTCGGTGAAGTAGACTTCCTCTCCGATAGAAACAATTCACCATCATCTCAACCTCTTCACACCAACATCAACAAAGAGATTGCTCGTGATGATGGAACCCCTCCCAAGTGTGATCCCGATGTAAATACCGGTTTGCAACTTCTTACCGCTAACGCCGGAAGTGATCAATCAACTGTGGATGATGGGGCCTCATCGGATGCTAAAGATAAGCGTTCCAAGATCACTGAGCTGGCACAATTGCAAGAGGACCTTCGACGCATGAATGAAGAGAACCAAAAGCTGAAGGAGATGCTCAGCCATGTCACCAGTAACTACGCGAACTTGCAAATGCATCTTGCAGCGTTATTGCAACAGCAACAGAACCAACGCGCTGAGAGCACGGAACAAGagGTTGTTCAAGGAAAAGCTGAGGAGAGAAACCATGGGGTTGGCGGAGGAACGGCGCCTAGGCAGTTCCTCGATTTGGGTCCAAGTAGTACGACCGAAATAGATGATCAAGTATCTAATTCTTCTTCGGATGAAAGGACTCGATCAAGCACAGCGCCGAAcaataaaaatgatgataagGATAAGAAAGAGACTGATCCAAACAACCCTTCCAACACTATGGATCCATCCACTCCGGAAGCTACTATGAGAAAAGCTCGTGTCTCAGTCCGCGCCCGATCAGAAGCACCCATGATCAGTGACGGGTGCCAATGGCGAAAATATGGACAAAAGATGGCTAAGGGAAACCCTTGTCCTCGAGCATACTACAGATGCACTATGGCAGTTGGTTGCCCGGTTCGCAAACAAGTTCAACGTTGTGCGGAGGATAAAACAATTTTGACAACTACATACGAAGGCACCCATAACCATCCACTGCCACCAGCTGCTATGGCCATGGCATCGACCACTGCCGCTGCTGCTAGCATGTTGCTGTCTGGTTCAATGTCCAGTGCCGATGGAATAATGAACCCAAATTTGCTAACTAGAGCCATTCTTCCTTGCTCTAGCATGGCAACTCTTTCAGCCTCAGCACCATTCCCCACAGTGACATTGGACCTCACACACAACCCAAACGCGTTGCAGTACCAAAGACCTCAAACCTCATTCCCATCGCAGCCTCACAACTTTGTGTCTGGACCCACGACAGCACAACTGCCGCAACTGATTGCACAAGCGCTCTATAATCAATCCAAATTCTCAGGCCTTCACTTGTCTCAAGATGTGGGGTCTAATAATTCTCAAGCTCCAAGACCGTCGTTGCAGCCAAGCCAACAGGTCTCCCTCGCTGACACGGTTAGTGCCATCACCGCCGACCCAAACTTCACGGCAGCACTCGCTGCCGCCATCACCTCCATCATCGGTGGTGTTAATCCAAACAACAAtgccaacaacaacaatactagtAGCAATCCCAATGTCATCAATAGTGCTAAAATCAGTAGCTTTTCAGGAAACTAA 1530 0.4817 MFPTLGFPVNLSRPTTALSPPSDHNRTVLGEVDFLSDRNNSPSSQPLHTNINKEIARDDGTPPKCDPDVNTGLQLLTANAGSDQSTVDDGASSDAKDKRSKITELAQLQEDLRRMNEENQKLKEMLSHVTSNYANLQMHLAALLQQQQNQRAESTEQEVVQGKAEERNHGVGGGTAPRQFLDLGPSSTTEIDDQVSNSSSDERTRSSTAPNNKNDDKDKKETDPNNPSNTMDPSTPEATMRKARVSVRARSEAPMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQVQRCAEDKTILTTTYEGTHNHPLPPAAMAMASTTAAAASMLLSGSMSSADGIMNPNLLTRAILPCSSMATLSASAPFPTVTLDLTHNPNALQYQRPQTSFPSQPHNFVSGPTTAQLPQLIAQALYNQSKFSGLHLSQDVGSNNSQAPRPSLQPSQQVSLADTVSAITADPNFTAALAAAITSIIGGVNPNNNANNNNTSSNPNVINSAKISSFSGN 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0162 509 MobiDBLite consensus disorder prediction 181 207 - -
Ssu6g0162 509 MobiDBLite consensus disorder prediction 1 25 - -
Ssu6g0162 509 MobiDBLite consensus disorder prediction 9 23 - -
Ssu6g0162 509 MobiDBLite consensus disorder prediction 487 509 - -
Ssu6g0162 509 ProSiteProfiles WRKY domain profile. 251 317 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0162 509 Gene3D WRKY domain 241 318 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g0162 509 Pfam WRKY DNA -binding domain 258 315 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0162 509 MobiDBLite consensus disorder prediction 208 225 - -
Ssu6g0162 509 SUPERFAMILY WRKY DNA-binding domain 249 317 IPR036576 GO:0003700|GO:0006355|GO:0043565
Ssu6g0162 509 SMART WRKY_cls 256 316 IPR003657 GO:0003700|GO:0006355|GO:0043565
Ssu6g0162 509 MobiDBLite consensus disorder prediction 78 99 - -
Ssu6g0162 509 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 22 491 IPR044810 GO:0003700
Ssu6g0162 509 MobiDBLite consensus disorder prediction 147 250 - -
Ssu6g0162 509 MobiDBLite consensus disorder prediction 428 447 - -
Ssu6g0162 509 Coils Coil 98 153 - -
Ssu6g0162 509 PANTHER WRKY TRANSCRIPTION FACTOR 6 22 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0162 Ssu-Chr6 2590320 2592956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0162 7 489 WRKY Transcription Factor Family AT1G62300 53.422 6.59e-148 433
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Ssu6g0162 WRKY 4.1e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0162 - - gmx:100127382 692.96