Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0160 ATGATACACCTTGCTTCGACCTTCGTCATTGCCCATTCAACAGAGAAGTACTACAACACTCCCCAACCTCTCTCAAAGTATATCCCCAAGAGTACTCCTAAGACAGCATTCCTTAATGAGATAGACTCTTGCAGGCGGGCCAAACCAAAATGGGCTTCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCACAGGAGGAAAGTATGGTGCAATATACCTAGTCACAGATCCCTCTGATGACTCTGAAAACCCAAAACCAGGCACACTCCGTTATGGTGCAATCCAAACGGAGCCGCTCTGGATCGTTTTTGACAAAGACATGGTTATTACGCTCGAGAATGAGCTTATTATGAATAGCTACAAGACCATTGATGGGAGAGGAGCTAAAGTGGAGATTGCGGATGGGCCTTGCATTACAATACAAGGTGTTAGTCATATTATCGTACATGGCATTAGCATCCATGATTGTAAACCAGCCAAGACTGGCCTTGTGAGGAGTACTCCCGACCATGTTGGCCATCGTCTAGGCTCTGATGGAGATGCCATTAGCATATTTTCTTCCTCAAATATTTGGATTGATCATTGCTTTCTGGCTCGTTGCACCGATGGCCTAATCGATATTATTCATGCCTCAACTGCCATTACCATCTCTAACAACTACTTTACCCAGCATGACAAAGTTATGTTGCTTGGACATAATGACCAATACACAGCagataaaataatgaaagtaaCAATAGCATTCAACCAGTTTGCTAGTGACCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTATGCCCATGTGGTCAACAACAAATATGATGAGTGGAAAATGTATGCTATAGGCGGCAGTGCTAACCCAACCATTTTAAGTGAAGGGAACTTTTTTGTAGCACCAAATGACCCAAATGCAAAACAGATTACCAAGAGGGAAGGGAAGGAAAACTGGAAGAGTTGGAAATGGAGGTCTTCCAAGGACTTATTCCTAAATGGTGCCTATTTTGTACCATCTGGGTTTGGAAGCTGTGCCCCAAATTATTCACCTACTCAATCTTTTACTGCTGCTCCAGGGTTCATGGTGCCTGCAATAACTCTCAATGCCGGCCCCACAAATTGTGTCGTTGGGAGAGCATGTTAA 1158 0.4352 MIHLASTFVIAHSTEKYYNTPQPLSKYIPKSTPKTAFLNEIDSCRRAKPKWASNRQALADCAIGFGKDATGGKYGAIYLVTDPSDDSENPKPGTLRYGAIQTEPLWIVFDKDMVITLENELIMNSYKTIDGRGAKVEIADGPCITIQGVSHIIVHGISIHDCKPAKTGLVRSTPDHVGHRLGSDGDAISIFSSSNIWIDHCFLARCTDGLIDIIHASTAITISNNYFTQHDKVMLLGHNDQYTADKIMKVTIAFNQFASDLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNFFVAPNDPNAKQITKREGKENWKSWKWRSSKDLFLNGAYFVPSGFGSCAPNYSPTQSFTAAPGFMVPAITLNAGPTNCVVGRAC 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0160 385 PANTHER PECTATE LYASE 18-RELATED 2 384 IPR045032 GO:0030570
Ssu6g0160 385 PRINTS Pollen allergen Amb family signature 120 136 IPR018082 -
Ssu6g0160 385 PRINTS Pollen allergen Amb family signature 84 109 IPR018082 -
Ssu6g0160 385 PRINTS Pollen allergen Amb family signature 61 78 IPR018082 -
Ssu6g0160 385 PRINTS Pollen allergen Amb family signature 264 283 IPR018082 -
Ssu6g0160 385 PRINTS Pollen allergen Amb family signature 326 350 IPR018082 -
Ssu6g0160 385 PRINTS Pollen allergen Amb family signature 184 205 IPR018082 -
Ssu6g0160 385 PRINTS Pollen allergen Amb family signature 356 379 IPR018082 -
Ssu6g0160 385 PRINTS Pollen allergen Amb family signature 286 305 IPR018082 -
Ssu6g0160 385 PANTHER PECTATE LYASE 2 384 - -
Ssu6g0160 385 SUPERFAMILY Pectin lyase-like 59 384 IPR011050 -
Ssu6g0160 385 Gene3D - 38 378 IPR012334 -
Ssu6g0160 385 SMART amb_all 112 309 IPR002022 -
Ssu6g0160 385 Pfam Pectate lyase 123 303 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0160 Ssu-Chr6 2560163 2562051 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0160 28 385 Polysaccharide Lyase AT1G11920 69.638 0.0 536
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0160 K01728 - gmx:100807483 707.597
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0160 6 2560163 2562051 Ssu1g0910 1 20159700 20162217 PCT