Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0154 ATGGAGGTTGTTGTTCCTAGACAAGAACAGTCAAATCAACACTCTGAGGTTAAGCTGGAGTTCTCAAGATGTTCGAAGAGGACTTCTAAACTGCTGTCCAAGAAAGGAAACGAGACAAAGAAGCTTACTGCTTCaaacaagaaaaggaaatttgaaGAAGATCTCTTGATTGACGATGTGGAAGATGAAGAGATGTTCATTCTTTTGAAGTCAAAGACCAGGAGCAGAGCTAGAAGAATGGAAAATGTGATGGATGTTGGACCAAATCCCAGAAAATGTCATCAAtgcaagaaaaaagagagaccaCTTTTTGTGCCTTGTACTAAATGCCCAGAAATGTACTGTATGCGATGTGTCGATAAATGGTACCCTGATATGTCTGTAGAAGAAATTGCTGCAAGTTGTCCATTTTGCCGGAAAAATTGCAACTGCAATGTTTGCTTGTGTACAAGAGGAATGATTAAGACATCTAACAGGGACATCAGCAATTATGAAAAAGCTCAGTATCTGCAATATATGATTAACTTAATCCTGccatttttgaaacaaatttgtCATGAACAAAGTCAAGAGGAGCAGATTGAAGCTAAAATACAAGGAAAATCTTCTTTTGAGATTGAGATGCCCCAAAGTCTTTGTGGTACCGATGAACGTGTCTATTGTGACCATTGTGCTACTTCAATTACCGACCTTCATAGAAGCTGCCCCAATTGTTCCTATGAACTCTGCCTTAGTTGTTGCCGAGAAATACGTGATGGAAGCATTACGCCCTGGGCTGAGCTGAAGATCCAATATGTGAATAGGGGCTATGATTATATGCAAGGTGGTGACCCTTTACCTGTGTCTTGTGATTTAGAGACATCAGAAGCTCATATTGATCAGTCTACTGTGTGGAATGCTAAGAGTGATGGAAGCATTAGATGTGCACCAAAGGAGTTGGGGGGTTGCGCTAGTGCTGTATTGGAGCTGAGACGCATCCTCCCACATGGGTGGATATCTGACTTGGAAGCCAGAGCTTGCAATATGCTGAAAATTTGGGAAAATGAACACACGACTCTTCAGCAAAAAGAAGCAGTATCAAGCTACACCTCTTTGAGAAACGAAGCTATTAGAGAAGACATAGATGACCATAACACAGGGATGTTGCTTTTCCAAAAGCATTGGCCTAATGGTGAACCAATTATAGTTCGTGATGTTCTTAAACAGGGGACAGGTCTGAGCTGGAAGCCAATGGTTATGTGGCGAGCATTATGTGAAAATATGGTTTCAGAGATCAGTTCAAAAATGTCAGAAGTGAAAGCCATTGATTGCCTGGCTAATTGTGAGGTAGAAATTGATACTCACACGTTCTTTAAAGGTTATACAGAGGGAAGAACATACAGAAATCTCTGGCCAGAGATGCTCAAGCTAAAAGACTGGCCCCCCTCCGATAAATTTGAAGATCTTTTGCCCCGCCATTGTGATGAGTTTATTCGCTCTTTGCCATTTCAAGAGTACAGTGATCCTCGGGCTGGAATTCTCAATCTTGCTGTGAAGTTGCCAGCCCATGTCCTAAAACCTGACATGGGTCCAAAAACATATATTGCTTATGGGATTAAAGAAGAGCTTGGTAGAGGAGACTCTGTAACAAAGCTTCACTGTGATATGTCAGATGCGGTGAATATTTTGACCCATACGGCCGAGGTGATGTTAACTGATGAGCAGCACTTTATTATTTCAAAGTTGAAAGAAGCACACAAGGCACAAGATGAGAGAGAACAGTGTGCTCAAGAGAGGGTTGCTAATAGCCTGAATGGTCGACCTTGCACAGACAAGAAAGAGCgtataaaaaataaggaagttttagaacccaaagacatgGAGAAGCACCCTATTGAAATTAATGGAAAGATCTTTCCAAATGACGTGCCTGAGGGGGTCACTTCTCCTGCTACAGAAAATGAATCAATGGAAACTGGTAGTGCCCTATGGGATATCTTTCGGAGAGAGGATTCTGAAAAGTTAGAAACATATCTTAGAAAACACTCAAAAGAATTTAGACATACTTATTGCTCTCCAGTTGAACagGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACATCGGAGcacaagaagaagctgaaggaGGAGTTTGGTGTAGAACCATGGACTTTTGAACAGAAACTTGGGGAGGCAGTATTTATTCCCGCTGGATGCCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCTGTAGACTTTGTGTCCCCAGAAAATATCCATGAGTGTCTGCGGTTAACTAATGAGTTCCGCCAGCTTCCCAAGAACCACAAGGCTAGAGAAGATAAACTTGAGATAAAGAAGATGATAGTTTATGCCGTTGATCAAGCTGTCAAAGACTTAACAGCTTTACTAAAGGGTTCTTGA 2418 0.3962 MEVVVPRQEQSNQHSEVKLEFSRCSKRTSKLLSKKGNETKKLTASNKKRKFEEDLLIDDVEDEEMFILLKSKTRSRARRMENVMDVGPNPRKCHQCKKKERPLFVPCTKCPEMYCMRCVDKWYPDMSVEEIAASCPFCRKNCNCNVCLCTRGMIKTSNRDISNYEKAQYLQYMINLILPFLKQICHEQSQEEQIEAKIQGKSSFEIEMPQSLCGTDERVYCDHCATSITDLHRSCPNCSYELCLSCCREIRDGSITPWAELKIQYVNRGYDYMQGGDPLPVSCDLETSEAHIDQSTVWNAKSDGSIRCAPKELGGCASAVLELRRILPHGWISDLEARACNMLKIWENEHTTLQQKEAVSSYTSLRNEAIREDIDDHNTGMLLFQKHWPNGEPIIVRDVLKQGTGLSWKPMVMWRALCENMVSEISSKMSEVKAIDCLANCEVEIDTHTFFKGYTEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRAGILNLAVKLPAHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQHFIISKLKEAHKAQDEREQCAQERVANSLNGRPCTDKKERIKNKEVLEPKDMEKHPIEINGKIFPNDVPEGVTSPATENESMETGSALWDIFRREDSEKLETYLRKHSKEFRHTYCSPVEQVVHPIHDQCFYLTSEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHKAREDKLEIKKMIVYAVDQAVKDLTALLKGS 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0154 805 Gene3D Cupin 365 777 - -
Ssu6g0154 805 SUPERFAMILY Clavaminate synthase-like 383 796 - -
Ssu6g0154 805 PANTHER LYSINE-SPECIFIC DEMETHYLASE JMJ25-LIKE 18 803 - -
Ssu6g0154 805 ProSiteProfiles JmjC domain profile. 502 768 IPR003347 -
Ssu6g0154 805 CDD cupin_RmlC-like 692 752 - -
Ssu6g0154 805 ProSiteProfiles Zinc finger RING-type profile. 93 139 IPR001841 -
Ssu6g0154 805 SMART cupin_9 483 768 IPR003347 -
Ssu6g0154 805 Pfam JmjC domain, hydroxylase 647 751 IPR003347 -
Ssu6g0154 805 MobiDBLite consensus disorder prediction 629 648 - -
Ssu6g0154 805 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 803 IPR045109 GO:0032454|GO:0033169
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0154 Ssu-Chr6 2508825 2513065 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Ssu6g0154 JmjC 9.8e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0154 K15601 K21989 gmx:100797860 1388.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0154 6 2508825 2513065 Ssu1g0919 1 20247612 20249031 PCT