Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0150 ATGGAGGGAGGTTCTAACGAGGCTTCTAGTGTGATGGGTTTTGGAGAGAATACAAGTAGTAGTGGGGTTTGTCCAGTGATGATGATGCCTTTAGTGACTTCTCATCATGCGGGTCATCATCCATTAAATCCTAATCTTAACAATCCCAATCCTAATGAaatcacaaacacaaacacaaacacaaacagtCTCTTCCTTCCCATGCCTTGTACTAATAATCACCACCCAAACCGCAATAGCACTGGCAACTCCTCTATCATCCACGACAATAACCACAACACCAACGCCACTGAGTTAGGGTATTTCATGGAgattcaccaccaccaccacaacaacaacaacaacgatggaagctcctcttcctcttcttccgcTGTCAAGGCCAAGATCATGGCCCATCCACACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCTCCGCCTGAAGTGGTGGCAAGGTTAGAAGAAGCATGTGCATCTGCTGCGGTGACAATGGCAGGAGGGAGGACAGCTAGCATAGGTGAGGATCCGGCGCTGGATCAGTTCATGGAGGCGTACTGTGAGATGCTGATCAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCCATGCTCTTCCTTCAAAAGATCGAGAGCCAGTTCAAATCTCTtactatttcttcttcttccgaCACTGCTTGTAATGAAGCTACTGATAGGAATGGATCATCCGAAGATGTTGATGCACACAACATAATAGATCCGCAGGCAGAGGACCAAGAGTTGAAAGGTCAACTCTTACTCAAGTACCGTGGATACCTAGGCAGTTTGAAGCAGGAATTCAccaagaagaggaaaaaaggcAAGCTGCCCAAAGAAGCAAGGCAACAATTACTTGAATGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCTCTTGCAGAGTCAACAGGCCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAATTTGTGGTGGTGGATCCAAGCCATCCACACTACTACATGGAAAATGTTCTGGGCAATCCCTTTCCCATGGATCTCTCCCACACAATGCTCTAA 1137 0.4151 MEGGSNEASSVMGFGENTSSSGVCPVMMMPLVTSHHAGHHPLNPNLNNPNPNEITNTNTNTNSLFLPMPCTNNHHPNRNSTGNSSIIHDNNHNTNATELGYFMEIHHHHHNNNNNDGSSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVTMAGGRTASIGEDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQKIESQFKSLTISSSSDTACNEATDRNGSSEDVDAHNIIDPQAEDQELKGQLLLKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLEWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVLGNPFPMDLSHTML 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0150 378 MobiDBLite consensus disorder prediction 1 20 - -
Ssu6g0150 378 SMART KNOX1_2 124 168 IPR005540 GO:0003677|GO:0005634
Ssu6g0150 378 SMART HOX_1 282 347 IPR001356 GO:0003677
Ssu6g0150 378 SUPERFAMILY Homeodomain-like 282 358 IPR009057 -
Ssu6g0150 378 SMART KNOX2_2 174 225 IPR005541 GO:0003677|GO:0005634
Ssu6g0150 378 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 3 367 - -
Ssu6g0150 378 CDD homeodomain 292 344 IPR001356 GO:0003677
Ssu6g0150 378 MobiDBLite consensus disorder prediction 40 59 - -
Ssu6g0150 378 Pfam KNOX1 domain 125 164 IPR005540 GO:0003677|GO:0005634
Ssu6g0150 378 Pfam ELK domain 260 280 IPR005539 GO:0003677
Ssu6g0150 378 MobiDBLite consensus disorder prediction 38 59 - -
Ssu6g0150 378 ProSiteProfiles ELK domain profile. 260 280 IPR005539 GO:0003677
Ssu6g0150 378 PANTHER - 3 367 - -
Ssu6g0150 378 Gene3D - 285 347 - -
Ssu6g0150 378 ProSitePatterns 'Homeobox' domain signature. 318 341 IPR017970 GO:0000981|GO:0006355
Ssu6g0150 378 Pfam Homeobox KN domain 300 339 IPR008422 GO:0003677|GO:0006355
Ssu6g0150 378 Pfam KNOX2 domain 177 224 IPR005541 GO:0003677|GO:0005634
Ssu6g0150 378 ProSiteProfiles 'Homeobox' domain profile. 280 343 IPR001356 GO:0003677
Ssu6g0150 378 SMART ELK_2 260 281 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0150 Ssu-Chr6 2417084 2421763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0150 102 378 Homeobox Transcription Factor Family AT1G62360 76.655 1.47e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Ssu6g0150 KNOX2 1.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0150 - - gmx:100127401 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0150 6 2417084 2421763 Ssu1g0925 1 20357346 20364456 PCT