Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0146 ATGAAAGCCTCAAAGCAACAGAAGCAGCATCAGCTCCAACAAAGAGGATGCAAGGCCTTGTGTTGCAGTTGCAGGTTCAGTGTTTCTTCCTCTGAAGAAGCAGAAAGCTCAGCCTCTGATAGGTTCCCTTCTGTTTCAAGCCTTGCACATGCCATGGTGCAAGAGAGGCTAGACCAAATGATTAGAGAAAGGATCGAAGCTAGGCATGTAGAGAGAAGAAGGCAGCAGAGCAGAGAAGGAACCAAGTTTGTAGTAATGGTAGCAATGGAGAAGAGCTCTTATGATCCAAGAGAGGACTTTAGGGAGTCCATGATGGAGATGATAACTGCCAACCACCTTCAAGACGCGAAAGATCTTCGTAGTCTATTGAACTACTATATCTCCATGAACTCTAATGAGTACCATAGTCTTATACTTGAGGTTTTTCATGAGGTTTGTACTAATTTGTTCTTATCGTGTAAATGCCATTGGTAA 474 0.4325 MKASKQQKQHQLQQRGCKALCCSCRFSVSSSEEAESSASDRFPSVSSLAHAMVQERLDQMIRERIEARHVERRRQQSREGTKFVVMVAMEKSSYDPREDFRESMMEMITANHLQDAKDLRSLLNYYISMNSNEYHSLILEVFHEVCTNLFLSCKCHW 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0146 157 ProSiteProfiles OVATE domain profile. 89 148 IPR006458 -
Ssu6g0146 157 PANTHER TRANSCRIPTION REPRESSOR-RELATED 12 151 - -
Ssu6g0146 157 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 87 150 IPR006458 -
Ssu6g0146 157 Pfam Transcriptional repressor, ovate 93 150 IPR006458 -
Ssu6g0146 157 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 12 151 IPR038933 GO:0045892
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0146 Ssu-Chr6 2333108 2333581 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Ssu6g0146 Ovate 3.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0146 - - var:108330150 275.404