Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0143 ATGGGGAAATCAGGGGGTAGAAGAAAGAAGGGTGGTTCGAACCCAAACCAAGGTGGCGTTGATAATTCGGGTTCAAGCGCGGCAGCCCCAACGGCCAATGGTGGGGTGGAGTTGGATTCGTCGATATTTTTGAAGAAGGCGAATGAGCTGAAAGAGGAAGGGAATAGGAGGTTTCAGAATAAGGACTACGCGGGTGCTCTTGAACAGTACGAGAGTGCTCTTCGACTAACCCCCAAAACGCACCCTGACAGAGCCGTTTTCCACAGCAACAGGGCCGCGTGTTTGATGCAGATGAAGCCCATAGATTATGAGGCTGTCATTGCTGAGTGCACCATGGCGCTTCAGGTCCAGCCCAGCTTTGTCCGGGCCCTTCTTCGCCGGGCCCGGGCGTTTGAGGCCGTTGGCAAGTATGAAATGGCTGTGCAAGACCTGCAGTTCTTGTTGGCAGCTGATCCTAGTAACCGCGATGCTTTGGAGATTTCCCAGAGATTGAGGACTGCGTTGGGGCCGCGCCAGGAGGCCCAGCAGGACCTCCACAGTCGCCCCTCGCCTGCTGCCCTTGGTGCTTCGGCTGTCCGTGGTGCCCCTATTGCTGGATTAGGGCCGTGTTTGCCGGCCCGGCCTGTGGCAAAGAAGGGAGCAAATTCAGCGGTTGGATCTGTTGTGTCGCCTAATAATAACAAGCTGGACAAGTCCCAGCCAGTTTTGCCTGCTGAAAATGGTCCTGATACCAAGTCCCAGTTGCCGAAACTGGTGTTGAAGCCTTCAAATGGTTCTGCAAAGCCACCTAACCCTAAAAAGGACGACCACAAGGAACAGTCATCAACCAATCATGGGCAGCGTTCTGAGGTTGCTACTCGGTGGAGACCGTTGAAGCTTGTTTATGATCATGACATTAGGCTTGCCCAGATGCCCGTCAATTGCGGTTTTAGAGTACTAAGAGATTTAGTAAGCAAAAGATTTCCTTCGTCAAGTTCAGTTCTGATCAAGTATAAGGATAGCGATGGTGATTTGGTTACTATAACCTCTACTGATGAACTCAGACTGGCGGAGTCTAGTGTTGATAGCCATCTTGTGAAAGAACCTGGGGAAGATAAAAGTGATTCTGTTTCCATGCTGAGACTGCATATTGTTGAAGTTAGTCCGGAGCAGGAGCCACCTTTAttggaagaagaggaagaaaaaccAGTGGAGAATGAAGGGATCAAGGGAGAAGAGAGTGGATCTCATTCTTCCCTTGGTGAGTCTGTCTCTGAAGTTCCTGATACCGAGGTTGATAAGATAGGGAAGGATGCTTCAAAGGAAAAGCCAGGAGCCACAGGAGATACTGAATGCAAAGAGGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGATCCAGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCTGAGGCACTTGAGGAAACAGTAACCAGTGAGGAGGCTCAGGATCTATTTGACAAGGCTGCTTCAAAGTTTCAGGAGGTGGCTGCTTTGGCTTTCTTCAACTGGGGTAATGTTCACATGTGCGCGGCTAGGAAGCGGATACCCCTGGATGAGTCAGCTGGGAAGGAGGTAGTGACAGAGCAGCTTCAAGTTGCTTATGACTGGGTCAAGGAAAAGTATTCTTTGGCAAGAGAGAAGTACGAGGAAGCACTCTCAATCAAACCAGACTTTTATGAGGGACTGTTGGCTCTGGGGCAGCAACAATTTGAAATGGCTAAACTTCATTGGTCTTTTGCACTTGCTAAGAAGATAGATCTATCAGGCTGGGATTCTAAGGAGACACTTCAACTTTTTGACAGTGCAGAGGAGAAGATGAAAGCTGCAACAGATATGTGGGAGAAACTGGAGGAACAGAGAGCAAAAGAGCTAAAGGATCCAAATGcaaccaagaaagaagaattattgagaagaagaaagaaacaaggAGGTGCTACTGAAGGTGAGTCCTCCAGTGTTGCAGGTCAGGGCGATATATCTGCAGAAGAAGCTGCTGAGCAAGCAGCTGTCATGAGATCACAAATTCACCTCTTCTGGGGTAATATGCTTTTCGAAAGATCCCAAGTTGAATGCAAACTGGGAATGAGTGGATGGAAGGAAAACCTGGATGCTGCTACTGAACGCTTTAAGCTTGCAGGGGCTTCTGAGGCTGATATTTCAATGGTTCTAAAGAATCATTGCTCAAATGGAGATGCAAAAGATGGAGATGATAAAAAGGTTGAGAACCCACAGCACAATAAGACTGTTAAACCAGAGATCAATAAGGCTAGTCAAGTATGA 2325 0.4714 MGKSGGRRKKGGSNPNQGGVDNSGSSAAAPTANGGVELDSSIFLKKANELKEEGNRRFQNKDYAGALEQYESALRLTPKTHPDRAVFHSNRAACLMQMKPIDYEAVIAECTMALQVQPSFVRALLRRARAFEAVGKYEMAVQDLQFLLAADPSNRDALEISQRLRTALGPRQEAQQDLHSRPSPAALGASAVRGAPIAGLGPCLPARPVAKKGANSAVGSVVSPNNNKLDKSQPVLPAENGPDTKSQLPKLVLKPSNGSAKPPNPKKDDHKEQSSTNHGQRSEVATRWRPLKLVYDHDIRLAQMPVNCGFRVLRDLVSKRFPSSSSVLIKYKDSDGDLVTITSTDELRLAESSVDSHLVKEPGEDKSDSVSMLRLHIVEVSPEQEPPLLEEEEEKPVENEGIKGEESGSHSSLGESVSEVPDTEVDKIGKDASKEKPGATGDTECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQDLFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEVVTEQLQVAYDWVKEKYSLAREKYEEALSIKPDFYEGLLALGQQQFEMAKLHWSFALAKKIDLSGWDSKETLQLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELLRRRKKQGGATEGESSSVAGQGDISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMSGWKENLDAATERFKLAGASEADISMVLKNHCSNGDAKDGDDKKVENPQHNKTVKPEINKASQV 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0143 774 SUPERFAMILY CAD & PB1 domains 286 358 - -
Ssu6g0143 774 SMART PB1_new 288 380 IPR000270 GO:0005515
Ssu6g0143 774 MobiDBLite consensus disorder prediction 420 445 - -
Ssu6g0143 774 MobiDBLite consensus disorder prediction 263 277 - -
Ssu6g0143 774 ProSiteProfiles TPR repeat profile. 47 80 IPR019734 GO:0005515
Ssu6g0143 774 Gene3D - 290 360 - -
Ssu6g0143 774 MobiDBLite consensus disorder prediction 634 675 - -
Ssu6g0143 774 MobiDBLite consensus disorder prediction 15 30 - -
Ssu6g0143 774 MobiDBLite consensus disorder prediction 218 233 - -
Ssu6g0143 774 MobiDBLite consensus disorder prediction 634 660 - -
Ssu6g0143 774 MobiDBLite consensus disorder prediction 381 445 - -
Ssu6g0143 774 PANTHER PROTEIN CLMP1 1 772 IPR044517 -
Ssu6g0143 774 SMART tpr_5 47 80 IPR019734 GO:0005515
Ssu6g0143 774 SMART tpr_5 121 154 IPR019734 GO:0005515
Ssu6g0143 774 SMART tpr_5 85 120 IPR019734 GO:0005515
Ssu6g0143 774 PANTHER - 1 772 - -
Ssu6g0143 774 MobiDBLite consensus disorder prediction 743 774 - -
Ssu6g0143 774 Pfam PB1 domain 288 379 IPR000270 GO:0005515
Ssu6g0143 774 SUPERFAMILY TPR-like 44 178 IPR011990 GO:0005515
Ssu6g0143 774 MobiDBLite consensus disorder prediction 744 763 - -
Ssu6g0143 774 MobiDBLite consensus disorder prediction 217 284 - -
Ssu6g0143 774 SUPERFAMILY TPR-like 494 590 IPR011990 GO:0005515
Ssu6g0143 774 ProSiteProfiles PB1 domain profile. 288 380 IPR000270 GO:0005515
Ssu6g0143 774 Coils Coil 614 634 - -
Ssu6g0143 774 Gene3D Tetratricopeptide repeat domain 453 660 IPR011990 GO:0005515
Ssu6g0143 774 Gene3D Tetratricopeptide repeat domain 43 167 IPR011990 GO:0005515
Ssu6g0143 774 CDD PB1 291 350 - -
Ssu6g0143 774 ProSiteProfiles TPR repeat profile. 121 154 IPR019734 GO:0005515
Ssu6g0143 774 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0143 Ssu-Chr6 2264733 2267057 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0143 44 168 Calmodulin-binding Proteins AT3G25230 27.941 5.15e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0143 - - gmx:100786963 1372.45