Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0142 ATGAAGCTCGACAACTCTAACGGCCAGGCGCCCCTCGCAGCCGACGTGTCGCCGCCGCACGACTACGCCGACGACGCCGAGGAGATTTTCGTGCCACCGCTGAACTTCGCGATGGTCGACAACGGCATTTTTAGGTCTGGCTTTCCCGATTCTGCCAACTTCGGATTCTTGAAATCCCTCCGTCTCCGTTCCATAATTTGTTTGTGTCCTGAACCTTATCCAGAAACGACTTCGGAATTTTTGAAAGCCAACGGAATAAGACTTTATCAATTCGGGATCGATGGCTGTAAGGAACCCTTTGTCAACATCCCAAACGATACAATTCGTGAAGCTTTGAAAGTAGCCCTCGATGTTAGGAACCACCCTTTGCTGATTCATTGTAAACGAGGGAAGCACCGCACTGGTTGTCTTGTGGGATGCATAAGAAGATTGCAGAGGTGGTGTCTATCATCTGTTTTTGACGAGTACCAAAGGTTTGCAGGTGCCAAAGCCAGAGTGTCAGACCAGAGGTTCATCGAATTGTTTGATATCTCTGGTTTGAAGCGCCACCCACTGTCATTTTCATGCTCAAGGAAATAG 579 0.4888 MKLDNSNGQAPLAADVSPPHDYADDAEEIFVPPLNFAMVDNGIFRSGFPDSANFGFLKSLRLRSIICLCPEPYPETTSEFLKANGIRLYQFGIDGCKEPFVNIPNDTIREALKVALDVRNHPLLIHCKRGKHRTGCLVGCIRRLQRWCLSSVFDEYQRFAGAKARVSDQRFIELFDISGLKRHPLSFSCSRK 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0142 192 Pfam Tyrosine phosphatase family 31 182 IPR004861 -
Ssu6g0142 192 PRINTS Plant and fungal dual specificity phosphatase signature 103 117 IPR020428 GO:0016791
Ssu6g0142 192 PRINTS Plant and fungal dual specificity phosphatase signature 67 80 IPR020428 GO:0016791
Ssu6g0142 192 PRINTS Plant and fungal dual specificity phosphatase signature 86 100 IPR020428 GO:0016791
Ssu6g0142 192 PRINTS Plant and fungal dual specificity phosphatase signature 30 47 IPR020428 GO:0016791
Ssu6g0142 192 ProSiteProfiles Dual specificity protein phosphatase domain profile. 35 189 IPR020422 GO:0006470|GO:0008138
Ssu6g0142 192 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 30 177 IPR029021 -
Ssu6g0142 192 PANTHER - 16 191 - -
Ssu6g0142 192 ProSitePatterns Tyrosine specific protein phosphatases active site. 125 135 IPR016130 GO:0016311|GO:0016791
Ssu6g0142 192 PANTHER TYROSINE-PROTEIN PHOSPHATASE 16 191 - -
Ssu6g0142 192 CDD PFA-DSP_Siw14 30 176 - -
Ssu6g0142 192 Gene3D Protein tyrosine phosphatase superfamily 29 179 IPR029021 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0142 Ssu-Chr6 2258604 2262029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0142 28 192 Protein tyrosine phosphatase (PTP) family AT4G03960 75.152 3.38e-96 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0142 K18045 - gmx:100785520 367.851