Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0138 ATGCACTTTGCTAGAGCTTCTTCAATGGGAGGGTCATGTTTCCATGCGCTTCGCTTGAAGAGGTTCAAGAGTAAGCCTCTGCCGGAGCCTTCTTCATCTTCCAAGACCCGGTTGGACTCTGACTTGGAGAACATGGAAAGAAGAAGGTTTGATAGCTTGGAATCATGGTCCATGATATTGGACTCCGAGAATGTGGAGACATGGGAAGCTTCAAAGGAGGATCAAGAAGAATGGACTGCCGACCTTTCCCAACTTTTCATAGGTAACAAGTTCGCATCCGGTGCTCACAGTCGAATTTACCGTGGCATTTACAAACAGAGAGCCGTTGCTGTCAAAATGGTCAGGATTCCCACACAGGATGAGGAGAGAAGAACCTTGCTCGAACAGCAATTCAAGTCTGAGGTGGCTTTACTTTCACGTCTCTTTCATCCTAACATAGTGCAGTTTATTGCAGCTTGTAAAAAACCGCCGGTCTACTGTATCATAACAGAATACATGTCACAAGGAACTCTGAGGATGTATCTGAACAAGAAAGAGCCATACTCTCTTTCAACAGAAACTATACTAAGGTTAGCTCTTGACATATCTAGGGGTATGGAGTACCTTCATTCGCAAGGTGTGATTCACAGAGATCTCAAGTCAAATAACTTGCTTCTCAATGATGAGATGAGGGTTAAGGTGGCAGACTTTGGAACATCGTGTCTTGAGACACGGTGTCGGGAGACCAAGGGAAACATGGGAACATATCGTTGGATGGCACCGGAGATGATTAAGGAAAAACCTTATACTCGTAAAGTTGATGTGTACAGTTTTGGAATTGTTCTTTGGGAACTCACAACCGCCCTAGTTCCCTTCCAAGGAATGACCCCTGTGCAGGCTGCTTTTGCTGTTGCTGAGAAGAACGAAAGGCCTCCGCTGCCTGCTAGTTGTCAGCCGGCACTTGCCCATCTCATAAAGCGTTGTTGGTCAGCAAACCCTTCTAAGAGGCCAGATTTCAGTGACATTGTGTGTACTCTGGAGAAGTACGATGAGTGTGTCAAGGAAGGCCTACCTCTGACCCATCATTCAGGCCTAGTCAGCAAAAACGCCATTATTGAACGCTTAAAAGGTTGCGTCACTATGAGCTCTTCCATACCTGTACAGGCTTGA 1149 0.4604 MHFARASSMGGSCFHALRLKRFKSKPLPEPSSSSKTRLDSDLENMERRRFDSLESWSMILDSENVETWEASKEDQEEWTADLSQLFIGNKFASGAHSRIYRGIYKQRAVAVKMVRIPTQDEERRTLLEQQFKSEVALLSRLFHPNIVQFIAACKKPPVYCIITEYMSQGTLRMYLNKKEPYSLSTETILRLALDISRGMEYLHSQGVIHRDLKSNNLLLNDEMRVKVADFGTSCLETRCRETKGNMGTYRWMAPEMIKEKPYTRKVDVYSFGIVLWELTTALVPFQGMTPVQAAFAVAEKNERPPLPASCQPALAHLIKRCWSANPSKRPDFSDIVCTLEKYDECVKEGLPLTHHSGLVSKNAIIERLKGCVTMSSSIPVQA 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0138 382 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
Ssu6g0138 382 Gene3D Transferase(Phosphotransferase) domain 1 168 356 - -
Ssu6g0138 382 SMART serkin_6 85 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0138 382 PRINTS Tyrosine kinase catalytic domain signature 163 176 IPR001245 GO:0004672|GO:0006468
Ssu6g0138 382 PRINTS Tyrosine kinase catalytic domain signature 310 332 IPR001245 GO:0004672|GO:0006468
Ssu6g0138 382 PRINTS Tyrosine kinase catalytic domain signature 247 257 IPR001245 GO:0004672|GO:0006468
Ssu6g0138 382 PRINTS Tyrosine kinase catalytic domain signature 266 288 IPR001245 GO:0004672|GO:0006468
Ssu6g0138 382 PRINTS Tyrosine kinase catalytic domain signature 201 219 IPR001245 GO:0004672|GO:0006468
Ssu6g0138 382 Gene3D Phosphorylase Kinase; domain 1 74 167 - -
Ssu6g0138 382 Pfam Protein tyrosine and serine/threonine kinase 87 338 IPR001245 GO:0004672|GO:0006468
Ssu6g0138 382 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE ISOFORM X1 18 370 - -
Ssu6g0138 382 CDD STKc_MAP3K-like 92 336 - -
Ssu6g0138 382 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 18 370 - -
Ssu6g0138 382 SUPERFAMILY Protein kinase-like (PK-like) 63 339 IPR011009 -
Ssu6g0138 382 ProSiteProfiles Protein kinase domain profile. 85 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0138 Ssu-Chr6 2220298 2224448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0138 9 373 MAP Kinase Kinase Kinase AT1G62400 84.000 0.0 645
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu6g0138 PK_Tyr_Ser-Thr 2.3e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0138 - - gmx:100803225 741.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0138 6 2220298 2224448 Ssu1g0944 1 20738040 20742753 PCT