Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0126 ATGTCTGTCATCGAAACCCCCGCCGTCCACCACCGCAGCGGGGGCGCCACCGATCACCACCGTCACCCCTCCAAGCGCAAATTCGACGATGAAGACGACGAGGATTTGTCAGACTTAGTCTGCGTGAGGATGCGGAAGGACGAGGCGAAGGCGGTGAATTCCTGGTCCGCCTCCTCCGGCGCCGCCGTGCAGCGATCGCACATCCAGTTCTTCGTCCGAATGATGTCCGGCGGAAACACGATTGTGATGCAGGCCTTCCCCGAAGACAGCGTGAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCAGTGTTTGAACAGAGGCTAATCTACAGGGGGAAGCAGCTTCAGTGTGAACAGACGCTCGCCGAGTGTTCCATCCAAAACGACGCGAACCTTCAATTAGTTGGTCGCATGCGCAGCACGGAGCATCCTCAAGCGTGGCAAGTTATCAACGACATGGTTTCTCTGGTGTACCGTCTCTGCCGCGGCGAGATGGTTCACGATGCCTTGAAGACTATCAAGGGTTTAATCACCAGCTACTTGAACATGACTCCCAGAATTGACAACGACTCTGCCTCTGGGTATTTTCAGATTTTCTTATCGTCTTCTGCCCCTGCTGTGCTTGTTATGCTCTATGTGTCCCCTTATGCAGGTAACAAGGACTGTGCTGATTCTTCTGTTAGGCACTTTTTGAGTTCTTGCCGCACCACCCTGTCTAAGGCGCTGCACGGGCAGTGTGCGCGCGTGGTGTTGGAGTTCTGTAAATTGCTGAGGAGAGTGGGGTGTGATGACCCTTTGTATCTCTATTGTCGGAGTACTTGTGGGTCCTTGTTGGAAACTGCTGGGGTCTCCTATGCTGGTTCTGAGAATGTTAAGGGATTGGTTTTGATTCAAGATATTTTCCCCTTTGTTTGTGAGCTTGCTAGTAGCCTGTTGAGGGACTTGGACTTGAGTATGGAATCCCCCACTGCCGCGGGGCATTTGTCCAATGATGTTGGGGATTTTACTGCTTTCCTGATACCTTTGAGGACTGGAATCAAGGAGCAACAATCTCTCAAGGATTCTATGGCTCAAGACAAACGCCATAAGGATATCTTGCTCGCCGATGAAATTGAATATCTTCATCGTCTGTACATTGAGTTATTGGACAAAATTGATCAGTGCCTTCAAAGAATGGACCAAAGCTTGGCTGGCCAGGAAATGATGGAAGGGGATAATCTTTATCCTGCGTGGTCTCATTATCTGTCCATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGCGTTTTGACACGGCAAAGAAGTGTGCTGTGTATGCTGATCGTCCGATATGCAAAGAGAACTGATGAGCATCAGTGGATTCTTGAGCATAGGTGTGTGACCAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCGGAGGTAAAAGAAGACTATGAGGAGTTGCACGAGATGCTTATTGACAGGTCTCAGTTATTGGCCGAATCTTTTGAATACATAGCACGTGCTGAGCCTGAATCTCTACATGCTGGCCTGTTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCGGGTGTACTAAGGGAGTGGTTTCTTCTGGTGTGTCAAGCAATATTTAATCCGCAAAATGCTCTTTTTGTGGCATGTCCAAATGATCGAAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTCGCTGGTCGAGTTATTGCATTAGCTTTGATGCATCGAGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCTGGAAACTATATTACTTTAGAAGATATAAGGGACGCAGATCCTCGTCTACATACTAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGAGAGGTGGAGGAATTAGGACACAGGAATGTGGTTGAGCTCTGCCCTGGCGGAAAAAACCTTGTAGTTGATAGTAAAAACAGGGACAAATATGTTGATCTTCTTATACAGGATCGCTTTGTAACATCCATATCTGAGCAGGTATCACATTTTGCCAAAGGTTTTACTGATATTCTTTCAAATTCAAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCATGGGAGTGAAGATACCATTTCTGTTGAAGATTGGAAAGCGCACACTGAGTATAATGGCTATAAAGAGACAGATATTCAGATATCTTGGTTTTGGGAGATTGTTGGGAGAATGACAGCGGATCAAAGGAaggttcttctatttttttggaCATCTGTAAAATATTTACCAGTTGAAGGTTTCCGTGGTTTGGCTTCCCGTCTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCATCTCACACATGCTTTTTCCGGCTGTGTTTCCCAGCTTATTCATCTTTGGCTGTCATGCAAGATCGTCTTCAAGTCATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2577 0.4587 MSVIETPAVHHRSGGATDHHRHPSKRKFDDEDDEDLSDLVCVRMRKDEAKAVNSWSASSGAAVQRSHIQFFVRMMSGGNTIVMQAFPEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQCEQTLAECSIQNDANLQLVGRMRSTEHPQAWQVINDMVSLVYRLCRGEMVHDALKTIKGLITSYLNMTPRIDNDSASGYFQIFLSSSAPAVLVMLYVSPYAGNKDCADSSVRHFLSSCRTTLSKALHGQCARVVLEFCKLLRRVGCDDPLYLYCRSTCGSLLETAGVSYAGSENVKGLVLIQDIFPFVCELASSLLRDLDLSMESPTAAGHLSNDVGDFTAFLIPLRTGIKEQQSLKDSMAQDKRHKDILLADEIEYLHRLYIELLDKIDQCLQRMDQSLAGQEMMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWSVLTRQRSVLCMLIVRYAKRTDEHQWILEHRCVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYITLEDIRDADPRLHTSCKQILDMDADFIDSDALGLTFVREVEELGHRNVVELCPGGKNLVVDSKNRDKYVDLLIQDRFVTSISEQVSHFAKGFTDILSNSKLQQYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYKETDIQISWFWEIVGRMTADQRKVLLFFWTSVKYLPVEGFRGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSLAVMQDRLQVITQEHIGCSFGTW 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0126 858 PRINTS Ubiquitin signature 79 99 IPR019956 -
Ssu6g0126 858 PRINTS Ubiquitin signature 100 120 IPR019956 -
Ssu6g0126 858 PRINTS Ubiquitin signature 121 142 IPR019956 -
Ssu6g0126 858 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 57 856 - -
Ssu6g0126 858 ProSiteProfiles HECT domain profile. 518 858 IPR000569 GO:0004842
Ssu6g0126 858 SUPERFAMILY Hect, E3 ligase catalytic domain 493 844 IPR035983 GO:0004842
Ssu6g0126 858 ProSiteProfiles Ubiquitin domain profile. 68 144 IPR000626 GO:0005515
Ssu6g0126 858 Gene3D Hect, E3 ligase catalytic domains 500 731 - -
Ssu6g0126 858 SMART ubq_7 68 140 IPR000626 GO:0005515
Ssu6g0126 858 Gene3D Hect, E3 ligase catalytic domain 618 700 - -
Ssu6g0126 858 Gene3D Hect, E3 ligase catalytic domain 741 857 - -
Ssu6g0126 858 SUPERFAMILY Ubiquitin-like 68 156 IPR029071 -
Ssu6g0126 858 PANTHER E3 UBIQUITIN-PROTEIN LIGASE UPL5 57 856 - -
Ssu6g0126 858 SMART hect_3 516 856 IPR000569 GO:0004842
Ssu6g0126 858 Pfam HECT-domain (ubiquitin-transferase) 547 850 IPR000569 GO:0004842
Ssu6g0126 858 MobiDBLite consensus disorder prediction 1 31 - -
Ssu6g0126 858 CDD HECTc 497 856 IPR000569 GO:0004842
Ssu6g0126 858 Pfam Ubiquitin family 71 142 IPR000626 GO:0005515
Ssu6g0126 858 Gene3D - 61 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0126 Ssu-Chr6 2089189 2094893 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0126 68 142 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 4.60e-12 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0126 - - gmx:100796470 1595.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0126 6 2089189 2094893 Ssu1g0959 1 20939073 20945919 PCT