Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0116 ATGGTTTCTGCGGAGAAGGATTCACCCTCCAATTCCAACGGAACCACTCACTCCACCATTTCAAGCAAAACTCAGCGACACATCGGGCGGTCCATGCGAACCGTGCGCTCCAAATTATTCCAACACGACCACGCCACGTGCGTCTCCGACAACCTAACCGATTCGCTAATGGAACTCGCCTCGCGAAACAACAAATCCGTTAAATCTTCCGTTATGGAGGAGCAACTCCTCGAGCTCTCTCAAGCCTTGAGCGATTTCTCGGCCTGTAGCAGCGATATCTCGGGGGAGCTCCAGAGGCTCGCCACGGTCTCCTCGTCCGAACCTGCTGCTGACGTGGACCGCGAACCCGAACCTGAGCCCGAGCCATGCCTAGGGTTTCTCCAAAGGGAGAGTTTCTCCACGGAAATCATCGACAGTATCTCGCCGGAGGATCTTCAGCCGACGGTGAAGATCTGCGTCGACGGACTACAGTCGCCGTCGGTGGCGGTGAAGCGATCGGCGGCGGGGAAGCTGAGGCTGTTGGCGAAGAACCGGGCGGACAACCGTGCTCTGATCGGCGAGTCCGGTGCGGTCCCTGCTTTAGTTCCGCTGCTCCGGTGCAGCGATCCGTGGACACAGGAACACGCGGTGACGGCGCTACTGAATCTCTCTCTTCTGGAGGAGAACAAGGCGCTGATAACGAGTGCTGGTGCGGTGAAGTCGCTGATTTACGCGCTCAAGACGGGGACGGAGACTTCGAAGCAGAACGCGGCTTGCGCGCTTCTGAGTTTGGCATTGGTGGAAGAGAACAAGAGCTCTATCGGTGCTTGCGGGGCGATACCGCCGCTGGTATCGTTGCTGTTGGGGGGTTCGAGCAGAGGGAAGAAGGACGCGCTGACGACGCTGTATAAGCTGTGTTCGGTGAGGCAGAATAAGGAGAGGGCGGTGAGCGCCGGGGCGGTGAGGCCGCTGGTGGAGCTGGTGGCGGAGCAGGGGAGCGGGATGGCGGACAAGGCGATGGTGGTGCTGAACAGCTTGGCGGGGATTGAGGAGGGGAAGGAGGCGATTGTGGAGGAAGGTGGGATGGCTGTGCTTGTGGAAGCGATTGAGGATGGATCCGTGAAGGGAAAGGAGTTCGCTGTTTTGACTCTTGTGCAGCTCTCTGCTGACAGCGTTAGGAACAGAGGGTTGCTTGTGAAGGAGGGTGGGATTCCTCCTCTCGTTGCTCTTTCCCAAAACGGGACTGTACGAGCTAAACACAAGGGTCTACTTGGTGTCATACGAGGAAAGGGGAAGAGGAGGGGAGTGGGGGAGTCATCTCATCACTTCCGTTGTTTGGCATCATGCAATGCTAAAGAAGTGACGCTGACGCTCCCCTTCTTTTGTTTGATGTTCTATGATTTTATTACCCTTTATCTAATAGAAtag 1407 0.5679 MVSAEKDSPSNSNGTTHSTISSKTQRHIGRSMRTVRSKLFQHDHATCVSDNLTDSLMELASRNNKSVKSSVMEEQLLELSQALSDFSACSSDISGELQRLATVSSSEPAADVDREPEPEPEPCLGFLQRESFSTEIIDSISPEDLQPTVKICVDGLQSPSVAVKRSAAGKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLLEENKALITSAGAVKSLIYALKTGTETSKQNAACALLSLALVEENKSSIGACGAIPPLVSLLLGGSSRGKKDALTTLYKLCSVRQNKERAVSAGAVRPLVELVAEQGSGMADKAMVVLNSLAGIEEGKEAIVEEGGMAVLVEAIEDGSVKGKEFAVLTLVQLSADSVRNRGLLVKEGGIPPLVALSQNGTVRAKHKGLLGVIRGKGKRRGVGESSHHFRCLASCNAKEVTLTLPFFCLMFYDFITLYLIE 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0116 468 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 312 354 IPR000225 GO:0005515
Ssu6g0116 468 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 4-LIKE 18 419 - -
Ssu6g0116 468 SUPERFAMILY ARM repeat 146 413 IPR016024 -
Ssu6g0116 468 Gene3D - 134 421 IPR011989 -
Ssu6g0116 468 Pfam Armadillo/beta-catenin-like repeat 262 300 IPR000225 GO:0005515
Ssu6g0116 468 Pfam Armadillo/beta-catenin-like repeat 180 217 IPR000225 GO:0005515
Ssu6g0116 468 PANTHER U BOX DOMAIN-CONTAINING 18 419 - -
Ssu6g0116 468 SMART arm_5 342 382 IPR000225 GO:0005515
Ssu6g0116 468 SMART arm_5 219 259 IPR000225 GO:0005515
Ssu6g0116 468 SMART arm_5 178 218 IPR000225 GO:0005515
Ssu6g0116 468 SMART arm_5 260 300 IPR000225 GO:0005515
Ssu6g0116 468 MobiDBLite consensus disorder prediction 1 28 - -
Ssu6g0116 468 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 231 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0116 Ssu-Chr6 1943155 1944899 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0116 90 423 U-box Gene Family AT2G23140 45.402 4.58e-77 251
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0116 - - gmx:100792402 638.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0116 6 1943155 1944899 Ssu1g0970 1 21176256 21178067 PCT