Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0114 ATGCAAACGTCTCAGAAACACCCAAGTTCAACTGGTATCAATTTCTATCACCAGCCGCCAGTGCAAGGCATTTACCCAATGTTGCAAAGCAATATGTGCCATGATGCCCATGATAGCAGCAGCCAGGGAACAACTAGTGTTTCTTCTGAAACCTGCAAAGAGCAATACTTTACTCTGGAATCATGCCCAGCACCCACTGGTTTCATGGATTGTGATGATTCCCCTTCCTATGCCAGTGTTTCATCATCTAAAAGGACTCCATTTTCTCCACAAGGTTCTCAATCATGCTATTCAGATCACCACCAGTCATCTGACAACAACTATGGATCGCCGATAAGCGGGTTGTCTTGCATTGATGATGGGCATGAACTGATGAAGCACAAACTTAGAGAACTGGAGATTTCATTGTTGGGGCCTGATGAATCAGACATTGTAGACAGTTGCGGCTGCTGCGTCAAGGGTGGCCTCCATGGAGCATCTCAGTTGGCTAAACATAACTGGGATCAGATTGCAcaaaatattcatcaatttgaCTTGAAAGGAGTCCTCAGGCTATGCGCACAGGCAGTGTCTGATGATGATATTCCAACAGCAAGAGGCTTGATGGATAATGTATTGGGGAAAATGGTATCAGTTGCTGGAGATCCAATCCAGAGGTTGGGTGCTTACTTGTTGGAGGGGCTTAGAGCAAGGTTGGAATCATCAGGGAATCTGATCTACAAATCCTTGAAGTGTGAAAAACCAACAAGCAAGGAACTGATGAGTTACATGCACATCCTGTACCAGACTTGCCCATACTGGAAGTTTGCATACATATCTGCAAATGCTGTCATCGCAGAAGCAATGGCAAATGAATCCAGGATTCATATAATTGATTTCCAAATTGCGCAGGGCACGCAGTGGCATTTACTTATCCAGGCTCTTGCACATAGGCCAGGGGGACCCCCTTCCCTTCGTGTAACCGGTGTTGATGATTCGCAGTCGTTTCATGCTCGGGGTGGAGATCTTCAGATTGTAGGAGAAAGGCTATCAGATTTTGCCAGGTCTTGTGGAGTTCCATTTGAATTCCACAGTGCTGCAATGTCTGGCGATGAGGTTGTGCGAGGAAATATTGAAATTCGATCCGGGGAATCTCTAGCTGTAAATTTTCCCTTTGTTTTGCACCACATGCCAGATGAGAGTGTGAGCACTGAAAATCACAGAGATAGATTGTTGAGGTTGGTTAAGAGCTTGTCTCCCAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAACACTTCTCCTTTCTTTCACAGGTTTGTTGAGACAATGGATTATTATACTGCTATGTTTGAATCCATAGATGTGGTTTGCCCCAGAGATGATAAGAAGCGGATTAGCGCAGAGCAGCACTGCGTGGCTCGAGACATTGTCAACATGATAGCTTGTGAGGGGGTTGAGAGAGTGGAAAGGCATGAACTTCTAGGAAAGTGGAGGTCAAGGCTTTCCATGGCTGGATTTAAACAGTGCCAATTGAGTTCTTCAGCGATGGCTGCTACGCAAAATCTCTTAAAGGACTTCAGTCAAAATTATAGGCTTGAACATAGAGATGGTGCTCTTTATCTTGGCTGGATGCACAGACATATGGCCACCTCTTCTGCTTGGAGGTGA 1653 0.4501 MQTSQKHPSSTGINFYHQPPVQGIYPMLQSNMCHDAHDSSSQGTTSVSSETCKEQYFTLESCPAPTGFMDCDDSPSYASVSSSKRTPFSPQGSQSCYSDHHQSSDNNYGSPISGLSCIDDGHELMKHKLRELEISLLGPDESDIVDSCGCCVKGGLHGASQLAKHNWDQIAQNIHQFDLKGVLRLCAQAVSDDDIPTARGLMDNVLGKMVSVAGDPIQRLGAYLLEGLRARLESSGNLIYKSLKCEKPTSKELMSYMHILYQTCPYWKFAYISANAVIAEAMANESRIHIIDFQIAQGTQWHLLIQALAHRPGGPPSLRVTGVDDSQSFHARGGDLQIVGERLSDFARSCGVPFEFHSAAMSGDEVVRGNIEIRSGESLAVNFPFVLHHMPDESVSTENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFHRFVETMDYYTAMFESIDVVCPRDDKKRISAEQHCVARDIVNMIACEGVERVERHELLGKWRSRLSMAGFKQCQLSSSAMAATQNLLKDFSQNYRLEHRDGALYLGWMHRHMATSSAWR 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0114 550 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 16 549 IPR005202 -
Ssu6g0114 550 MobiDBLite consensus disorder prediction 79 105 - -
Ssu6g0114 550 Pfam GRAS domain family 182 550 IPR005202 -
Ssu6g0114 550 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 16 549 - -
Ssu6g0114 550 ProSiteProfiles GRAS family profile. 170 550 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0114 Ssu-Chr6 1897615 1899267 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0114 1 550 GRAS Transcription Factor Family AT4G17230 58.727 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu6g0114 GRAS 2.7e-125 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0114 - - gmx:100776109 979.163
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0114 6 1897615 1899267 Ssu1g0975 1 21243282 21244940 PCT