Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0108 ATGCACCTTCAACTGGGTGAAATTTCTGCAGTGGTTGTGTCATCCCCTGACATGGCCAAGGAGATAATGAAGACACATGATCTTAATTTTGTGCAGAGGCCAGAACTCCTTTGTCCTAAAATCATGGCCTATGGATCAACAGATATTGCCTTCGCTCCATACGGTGATTACTGGAGACAGATGAGGAAAATATGTACGCTGGAGCTTCTAAGTGCCAAAAGTGTTCACTCTTTCGCCTTCATTCGTGAAGATGAGGTGGCTGAGTTCGTAAAATCCGTTCAATTGTCTGCATGTGCAGGTTCACAAGTCAATGTTTCTGAAAGTGTTTTCTCTTTGGTAAGTACCATTGTTTCAAGGGCAGCCTTTGGTAAAAAATCTGAGTATGAAGAGGAACTTTTGTCTTTGCTCAAGAACGGAGCAGAACTGACGGGAGGGTTTGATCTTGCTAATTTATTCCCTTCAATGAAAGCTATTCATCTCATAACTCGAATGAAAGCCAAATTGGAGGACATGCAAAAAGAGCTGGACaagattttagaaaacattatcAACCAGCATCAATCAAACCATGGTAAGGGTGAAGCAGAAGAAAAACTCGTTGATATTCTTTTGCGCGTGCAGCAAAGTGGCAGCCTAGAGATCCCAGTCACAATTGACAACATCAAAGCCGTGATATGGGACATATTTGGGGCTGGGACTGACACTTCAGCAACAGTACTAGAATGGGCTATGTCAGAGCTGTTGAAAAACCCAAGAGTGATGAAAAAGGCACAGTCTGAAATAAGAGAAGCTTTGGGGGGAAAGGAAACGATTCGCGAGAGTGATGTATATGAACTTAGCTACCTGAAGTCAGTGATCAAGGAGACCATGAGGTTACATCCACCCGTGCCTTTGTTGCTCCCAAGAGAATGCAGGGCACCGTGCAAAATAGGTGGATATGAAATACCTATCAAGACTAAAGTGATTATACATGCATGGGCACTTGGGAGAGATCCCAAGCATTGGTATGAAGCGGAGAAGTTTATACCTGAGAGGTTTGATAGCACAGGTTTTGATTTTAAAGGGAATAATTTTGAGTACATCCCTTTTGGGGCAGGTAGGAGAATGTGTCCTGGCATTTTACTTGGCTTAGCTAATACTGAACTTCCTTTGGTTGCATTGCTCTATCACTTTGACTGGGAACTCCCTAGTGGAATGAAACCAGAGAACTTGGATATGACTGAAGCCTTTGGAGCTACAATGGGAAGGAAAAACAACCTATATTTGATACCAACTCCATATGACTATTCCCTTCATCATCATGCCATTGCCACAGTTTGTCGGATTAAAAAGTCATAA 1338 0.4215 MHLQLGEISAVVVSSPDMAKEIMKTHDLNFVQRPELLCPKIMAYGSTDIAFAPYGDYWRQMRKICTLELLSAKSVHSFAFIREDEVAEFVKSVQLSACAGSQVNVSESVFSLVSTIVSRAAFGKKSEYEEELLSLLKNGAELTGGFDLANLFPSMKAIHLITRMKAKLEDMQKELDKILENIINQHQSNHGKGEAEEKLVDILLRVQQSGSLEIPVTIDNIKAVIWDIFGAGTDTSATVLEWAMSELLKNPRVMKKAQSEIREALGGKETIRESDVYELSYLKSVIKETMRLHPPVPLLLPRECRAPCKIGGYEIPIKTKVIIHAWALGRDPKHWYEAEKFIPERFDSTGFDFKGNNFEYIPFGAGRRMCPGILLGLANTELPLVALLYHFDWELPSGMKPENLDMTEAFGATMGRKNNLYLIPTPYDYSLHHHAIATVCRIKKS 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0108 445 Coils Coil 161 188 - -
Ssu6g0108 445 Gene3D Cytochrome P450 1 426 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 PANTHER CYTOCHROME P450 FAMILY 71 PROTEIN 1 427 - -
Ssu6g0108 445 PRINTS E-class P450 group I signature 324 348 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 PRINTS E-class P450 group I signature 112 130 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 PRINTS E-class P450 group I signature 240 266 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 PRINTS E-class P450 group I signature 360 370 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 PRINTS E-class P450 group I signature 18 39 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 PRINTS E-class P450 group I signature 220 237 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 PRINTS E-class P450 group I signature 370 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 PRINTS E-class P450 group I signature 283 301 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 363 372 IPR017972 GO:0005506|GO:0016705
Ssu6g0108 445 PRINTS P450 superfamily signature 284 295 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 PRINTS P450 superfamily signature 361 370 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 PRINTS P450 superfamily signature 231 248 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 PANTHER CYTOCHROME P450 71B11-RELATED 1 427 - -
Ssu6g0108 445 SUPERFAMILY Cytochrome P450 2 426 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Ssu6g0108 445 Pfam Cytochrome P450 3 418 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0108 Ssu-Chr6 1799464 1801026 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0108 1 424 Cytochrome P450 AT3G26310 42.227 1.66e-125 372
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0108 - - gmx:100794503 760.755