Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0104 ATGGGTACTGATGAGAGTCGACAATCATTGCTTTCAGAGTCAAGAGATCATTCTCATCTCAATGAGAAAAATGACTTCCAGAGGAGAAGGCCTCGACGTGGTAATGCTTCAGAGAAAGAGAACAACCTCCAAGAACAAAATGTTGTCCAAAACCCTCAACATATAGATGCAAAACCACAAGCAGAATTCCATTTCAAGCCAGTGCTCTTATGGTTAGCTGCCTACCTAGGTGGAGGAACCCTATGCTTCCTTCTCACAAGTCATCAGATCAAGGGCATAAAAACCAATGGGTTTCTTGATGCCATTTACTTTTGTGTGGTGACAATGACTACTGTTGGATATGGAGATCTTGTGCCAAATAGCCAATTGGCAAAACTTCTTGCCTGCATTTATGTCTTCACTGGCATGGCTCTTGTAGGGTTAATTCTTAGCAAGGCAGCAGATTACATTGTTGAAAAACAGGAAATCTTCCTAGTTAGAACCTTATGGAAGGGTGAAAATTTTGGTCCATGA 513 0.4152 MGTDESRQSLLSESRDHSHLNEKNDFQRRRPRRGNASEKENNLQEQNVVQNPQHIDAKPQAEFHFKPVLLWLAAYLGGGTLCFLLTSHQIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPNSQLAKLLACIYVFTGMALVGLILSKAADYIVEKQEIFLVRTLWKGENFGP 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0104 170 SUPERFAMILY Voltage-gated potassium channels 62 152 - -
Ssu6g0104 170 Gene3D - 53 159 - -
Ssu6g0104 170 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 17 169 - -
Ssu6g0104 170 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 17 169 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu6g0104 170 Pfam Ion channel 72 151 IPR013099 -
Ssu6g0104 170 MobiDBLite consensus disorder prediction 9 39 - -
Ssu6g0104 170 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0104 Ssu-Chr6 1765298 1765810 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0104 52 170 Ion Channels AT5G55630 57.143 2.51e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0104 K05389 - gmx:100799492 293.508