Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0103 ATGATTGCAGGAACTATTTTTCTGTATTTTGTTGAAAATCTAGATTTTGTTGATGCCCTCTATTGTGTTTGTTCCACAGTTACTACTTTAGGTTATGGGGATAAGAGCTTCTCGACTACTATTGGTCGTGCTTTTGCTGTGTTCTGGATATTGAGCAGCACCATTTGCTTAGCTCAGTCTTTTGCTTATCTTGCTGAACTTTATACTGAAGAAAGACAAAAATCACTGGTAAAAATGGTTCTTGAACGAAAATTGTCACTCTTTGATCTTGAGGCAGCTGATCTTGATGGAGACCATGTTGTGAGTGCTACAGAGTTCGTTTTATACAAGTTGAAGGAAATGGGAAAGATTAACCAAGAAGATATTCTAATTGTGAtggatatttttagaaaactagaTTTTGATAAATCAGGAACCCTGACGAAGCTGATCTCAGATATTCTGAATCATCTTAACCATAGACATGCCTACTgcatcatgaattttaatttatattttaatatttgtcatCGGTATCATCTTTTATACACTATTGCGGCGTTTCTAAGAGTTCCTGTAGGACCTGTACTCTAA 573 0.3351 MIAGTIFLYFVENLDFVDALYCVCSTVTTLGYGDKSFSTTIGRAFAVFWILSSTICLAQSFAYLAELYTEERQKSLVKMVLERKLSLFDLEAADLDGDHVVSATEFVLYKLKEMGKINQEDILIVMDIFRKLDFDKSGTLTKLISDILNHLNHRHAYCIMNFNLYFNICHRYHLLYTIAAFLRVPVGPVL 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0103 190 SUPERFAMILY EF-hand 90 142 IPR011992 -
Ssu6g0103 190 Pfam Ion channel 2 68 IPR013099 -
Ssu6g0103 190 PANTHER OUTWARD RECTIFYING POTASSIUM CHANNEL PROTEIN 2 146 - -
Ssu6g0103 190 SUPERFAMILY Voltage-gated potassium channels 2 83 - -
Ssu6g0103 190 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 2 146 IPR003280 GO:0005267|GO:0016020|GO:0071805
Ssu6g0103 190 Gene3D - 1 56 - -
Ssu6g0103 190 Gene3D - 57 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0103 Ssu-Chr6 1764445 1765221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0103 2 148 Ion Channels AT5G55630 63.946 3.35e-60 190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0103 K05389 - gmx:100799492 259.61