Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0097 ATGCATATCTCTCCTCTGGTCCTGCTTATGGCTTGGCTGGCCTCTCTGCTGGCATGGCTATTGGTTTCGTATGACGCTGGTGTTAGAGCCAATGCACATCAGCCACAACTTTTTGTTGGAATGATTCTCATCCTCATTTTTGCTGAAGCTCTTGCCCTTTATGGTCTCGTTGTTGGGATTATCCTGTCTTCTCGTGCTGGCTAG 204 0.4804 MHISPLVLLMAWLASLLAWLLVSYDAGVRANAHQPQLFVGMILILIFAEALALYGLVVGIILSSRAG 67
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0097 67 SUPERFAMILY F1F0 ATP synthase subunit C 6 63 IPR035921 -
Ssu6g0097 67 PANTHER V-TYPE PROTON ATPASE SUBUNIT C2 10 67 - -
Ssu6g0097 67 CDD ATP-synt_Vo_c_ATP6C_rpt2 25 63 - -
Ssu6g0097 67 Pfam ATP synthase subunit C 25 62 IPR002379 GO:0015078|GO:0033177|GO:1902600
Ssu6g0097 67 Gene3D - 5 67 IPR035921 -
Ssu6g0097 67 PRINTS Vacuolar ATP synthase 16kDa subunit signature 41 64 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu6g0097 67 PRINTS Vacuolar ATP synthase 16kDa subunit signature 14 40 IPR000245 GO:0033179|GO:0046961|GO:1902600
Ssu6g0097 67 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 10 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0097 Ssu-Chr6 1732177 1733008 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0097 4 67 Primary Pumps ATPases(2) AT4G38920 71.875 1.32e-22 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0097 K02155 - dct:110116227 72.7886