Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0082 ATGGCTGAATCTGACAACGAGTCAGGTGGTCAAGCAAGTGGAAACAATGAATTGTCAAGGTGCAGAGAGCAAGATAGGCTCCTTCCCATAGCGAACGTGAGCAGGATCATGAAGAAGGTGTTACCGGGCAACGCCAAGATTtcgaaagaaggaaaagagacTATGCAAGAGTGTGTGTCAGAGTTCATCAGCTTCATAACAGGGGAGGCGTCAGACAAGTGCCagaaagagaagaggaagaCCATCAACGGTGATGATCTTTTGTGGGCCATGACCTCGCTCGGCTTTGAAGACTATGCAGAGCCCCTCAAAGCTTACTTGCACAAGTACAGGGAGATGGAAGGGGAAAAGACTGCTATGATTGGGAAGCAGCATGCTCCTACTGGCCTTTATGCAAATCCACCATGA 408 0.4485 MAESDNESGGQASGNNELSRCREQDRLLPIANVSRIMKKVLPGNAKISKEGKETMQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTSLGFEDYAEPLKAYLHKYREMEGEKTAMIGKQHAPTGLYANPP 135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0082 135 PRINTS CCAAT-binding transcription factor subunit A signature 93 111 - -
Ssu6g0082 135 PRINTS CCAAT-binding transcription factor subunit A signature 74 92 - -
Ssu6g0082 135 PRINTS CCAAT-binding transcription factor subunit A signature 55 73 - -
Ssu6g0082 135 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 1 129 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu6g0082 135 SUPERFAMILY Histone-fold 24 124 IPR009072 GO:0046982
Ssu6g0082 135 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 27 91 IPR003958 -
Ssu6g0082 135 MobiDBLite consensus disorder prediction 1 21 - -
Ssu6g0082 135 Gene3D Histone, subunit A 15 129 IPR009072 GO:0046982
Ssu6g0082 135 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y PROTEIN 1 129 - -
Ssu6g0082 135 ProSitePatterns NF-YB/HAP3 subunit signature. 58 74 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ssu6g0082 135 MobiDBLite consensus disorder prediction 1 18 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0082 Ssu-Chr6 1431462 1431869 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0082 1 124 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.226 1.86e-69 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu6g0082 CBFD_NFYB_HMF 1.2e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0082 K08065 - gmx:100305641 222.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0082 6 1431462 1431869 Ssu1g0999 1 21616866 21617426 PCT