Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0080 ATGAACATGAGGCAGGTAGCAGCAGAGAACAACCACACAGCAGCAGAGGAGAACGAATGCACGGTGAGGGAGCAAGACCGGTTCATGCCAATTGCAAACGTGATAAGGATCATGCGGAAAATCCTTCCTCCGCACGCCAAAATTTCCGATGATGCAAAGGAGACAATCCAAGAGTGCGTTTCGGAGTACATCAGCTTCATCACCGGCGAGGCCAACGAGCGTTGCCAGAGGGAGCAACGCAAGACCATAACCGCTGAGGACGTGCTTTGGGCTATGAGCAAGCTTGGGTTCGATGACTACATCGAACCACTCACCATGTACCTTCACCGGTACCGTGAGCTCGAGGGTGACCGCACCTCTATGAGGGGTGAACCACTTGGCAAGAGGACCGTGGAATACGCCACTCTTGGGGTTGCTACCGCTTTTGTGCCACCACCCTTCCACCCCAATGGATACTTTGGTGCTGCTGCCATGGGGGGTTACGTTCGGGATGCGCCAAATGCTGCGTCCTCTCACCACCCTGGAATCTCAAATGCTGAACCAAATGCTCgctcaatataa 561 0.533 MNMRQVAAENNHTAAEENECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTVEYATLGVATAFVPPPFHPNGYFGAAAMGGYVRDAPNAASSHHPGISNAEPNARSI 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0080 186 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Ssu6g0080 186 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Ssu6g0080 186 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Ssu6g0080 186 MobiDBLite consensus disorder prediction 167 186 - -
Ssu6g0080 186 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Ssu6g0080 186 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Ssu6g0080 186 SUPERFAMILY Histone-fold 25 124 IPR009072 GO:0046982
Ssu6g0080 186 Gene3D Histone, subunit A 14 133 IPR009072 GO:0046982
Ssu6g0080 186 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 9 137 - -
Ssu6g0080 186 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 9 137 IPR027113 GO:0001228|GO:0006355|GO:0016602
Ssu6g0080 186 MobiDBLite consensus disorder prediction 171 186 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0080 Ssu-Chr6 1408332 1408892 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0080 10 118 CCAAT-HAP3 Transcription Factor Family AT5G47670 88.991 3.40e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Ssu6g0080 CBFD_NFYB_HMF 4.4e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0080 K08065 - gmx:100800011 321.627