Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0078 ATGGGTGAACAATTGAGGCTACTAAAAGTCATTGTTGTGCAAGGGAAGAGATTAGTGATCCGGGATTTCAAGAGCAGTGACCCTTATGTTGTTGTCAAGCTGGGGAATCAGACAGCAAAGACCAGGGTCATTAATTGTTGCTTGAATCCTGTTTGGAATGAAGAGCTGAATTTCACTCTGACAGAACCTTTGCGAGTTCTAAATTTGGAAGTATTTGATAAAGATCTTTTGAAGGCTGATGACAAGATGGGAAATACTTACCTCAACCTTCAACCATTAATCTATGCATCTAGATTAAGAGATATTTTAAAGGTCTCCTCTGGTGAGACAGCATTGAGGAAGGTCACACCGGCTAGCGAAAATTGTCTTGCCCGTGACAGCAGTATCAATTGTGTTAATGGTGAAGTGGTACAAAGTGTTTGGTTAAGGCTTCGTGGGGTTGAGTCTGGGGAGCTACAATTGACGATCAAGTTGATCACTTCTGCAGCTGCTTCCTCAATATAG 504 0.4187 MGEQLRLLKVIVVQGKRLVIRDFKSSDPYVVVKLGNQTAKTRVINCCLNPVWNEELNFTLTEPLRVLNLEVFDKDLLKADDKMGNTYLNLQPLIYASRLRDILKVSSGETALRKVTPASENCLARDSSINCVNGEVVQSVWLRLRGVESGELQLTIKLITSAAASSI 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0078 167 CDD C2_ArfGAP 7 150 - -
Ssu6g0078 167 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 11 1 163 - -
Ssu6g0078 167 Pfam C2 domain 8 94 IPR000008 -
Ssu6g0078 167 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Ssu6g0078 167 Gene3D C2 domain 5 165 IPR035892 -
Ssu6g0078 167 SMART C2_3c 7 102 IPR000008 -
Ssu6g0078 167 PRINTS C2 domain signature 46 59 IPR000008 -
Ssu6g0078 167 PRINTS C2 domain signature 22 34 IPR000008 -
Ssu6g0078 167 PRINTS C2 domain signature 67 75 IPR000008 -
Ssu6g0078 167 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 5 159 IPR035892 -
Ssu6g0078 167 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 1 163 IPR044562 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0078 Ssu-Chr6 1367226 1368334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0078 1 159 C2H2 Transcription Factor Family AT4G21160 40.881 8.19e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0078 - - gmx:100798217 294.664
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0078 6 1367226 1368334 Ssu1g1006 1 22008863 22009576 PCT