Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0073 ATGGACGCTCTGTCATGGACACTAAAGAACTTGACTACCCAATCTACCATGATTTATCTCATACATGTATTCCCTGAGATCAAGCACATTCCAAATCCATTAGGAACAGGAATGATTCCAAGCAATCAAGTGAGTGCTGAGCAGGTGGAGAGTTATATTGCTCAAGAAAGAGGCAAGAGGAGAGAGCTCCTTCAGAAATTCCTACAATCATGCTCTACTTCCAAGGTTAAGGCAGACACCATCCTGATTGAGAGTGACTTAGTTGCGAAGGCTATCCTCGACCTCATTCCCATTCTTCAAATAAGAAATCTAGTGATTGGAGCCACCAAAAGaaaatcaaaatcaagGAAAGGGAATAGCATAGCCGATCAGATACTGCAGAATGCACCACAAGGTTGCAAAGTGAGAATTGTAAGTGAAGGGAAGGAAGTAAATGAGCAGATGATGTCACCCCCTCCACAGGCGCTTACCACGCGCACCTCTGCTAATGATACTTCCTTAACTACCCCAAAAAAAGAAGATCATCAACATGATTCGGTTTCATGCATTTGTTTCATACCCAAGTTTAAATGA 573 0.4171 MDALSWTLKNLTTQSTMIYLIHVFPEIKHIPNPLGTGMIPSNQVSAEQVESYIAQERGKRRELLQKFLQSCSTSKVKADTILIESDLVAKAILDLIPILQIRNLVIGATKRKSKSRKGNSIADQILQNAPQGCKVRIVSEGKEVNEQMMSPPPQALTTRTSANDTSLTTPKKEDHQHDSVSCICFIPKFK 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0073 190 MobiDBLite consensus disorder prediction 150 167 - -
Ssu6g0073 190 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 2 138 - -
Ssu6g0073 190 MobiDBLite consensus disorder prediction 143 173 - -
Ssu6g0073 190 Gene3D HUPs 1 150 IPR014729 -
Ssu6g0073 190 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 1 189 - -
Ssu6g0073 190 CDD STK_N 3 141 - -
Ssu6g0073 190 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 189 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0073 Ssu-Chr6 1333716 1335127 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0073 4 142 U-box Gene Family AT4G25160 30.714 5.67e-14 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0073 - - gmx:100527773 290.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0073 6 1333716 1335127 Ssu1g1010 1 22091083 22092769 PCT