Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0072 atgaaagaaataaaattgaagaaagcAGCAGACATCATGTCATCGAAGGGGTCATGGGAAAGGGAGCACGATGAGTGCTACGATACCGATGAAGAAAGGTCCATTTGCAGTTGCGGTTTCATTGGGTTCAAGAGAAACCAAGTGATAGATTGCAGCCTCAGCCTCAGCCTCAGCAGCAGCAGCGAGATAGGAGAGGAAGATTCAGAGGAGTTGTTTGAGATCAATCTGAAGGAGCCTTTGCCTTTGGATACAATAAAAGAAGACTGCGAGAGCACTGTGTTTTCTCTAGATATCCACAACGGCAAAGATGTTGTCTATGTGGCAGTAGGCAGCGATGGAGATTCAAGCATGGAAGCTCTTTCATGGGCCTTGAACCACGCCGTGACACCCTCTGCCACCGTCTGTCTCGTACACGTCTTCCCTCAAGTCAAGCTCATTCCAAGTCcatTGGGAAAAATTCCAAGGAGTCACGTAAATTTGGAGTATGTTAACATGCACTTGACACAAGAGAAAGGCAAGAGAAAATTGTTCCTTCAAAAGTTCATCGACCTCTGCGTTGATTCGAAGGTTAAGGTGGAGATGATGCTTCTTGAGGGTGACAACGTTGCTAAAGCCATCACGGACCTTGTCGGAAATCTTAATATAAGGAAATTGGTGATTGGAATTACCAAATCTAATTTAAGAAAATATGGGTCTAGAAGGCAAAATGCCATAGCGGCCAAGGTACTTAAAAATGCACAGGAAAGCtgtgatataaaaattatctgCGAAGGAAGAGAAGTGATCGACCAGATGATTGATTGCACTTCACCACGCTCCATAGACGATGGGAGTTCCAGAGTTTcacaagaaaaagataaatcccGTGGATTTGTCCCACTTAAGCATTTTATGTCCAGTTCGTTATGGTTATTTAGGTCCATCACCAAGATAAGATGA 939 0.4153 MKEIKLKKAADIMSSKGSWEREHDECYDTDEERSICSCGFIGFKRNQVIDCSLSLSLSSSSEIGEEDSEELFEINLKEPLPLDTIKEDCESTVFSLDIHNGKDVVYVAVGSDGDSSMEALSWALNHAVTPSATVCLVHVFPQVKLIPSPLGKIPRSHVNLEYVNMHLTQEKGKRKLFLQKFIDLCVDSKVKVEMMLLEGDNVAKAITDLVGNLNIRKLVIGITKSNLRKYGSRRQNAIAAKVLKNAQESCDIKIICEGREVIDQMIDCTSPRSIDDGSSRVSQEKDKSRGFVPLKHFMSSSLWLFRSITKIR 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0072 312 PANTHER AMINOACYLTRANSFERASE, E1 UBIQUITIN-ACTIVATING ENZYME-RELATED 27 306 - -
Ssu6g0072 312 CDD STK_N 104 258 - -
Ssu6g0072 312 Gene3D HUPs 99 254 IPR014729 -
Ssu6g0072 312 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 109 225 - -
Ssu6g0072 312 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 52-LIKE 27 306 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0072 Ssu-Chr6 1326553 1328045 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0072 108 289 Plant U-box Gene Family AT5G57035 32.292 1.04e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0072 - - gmx:100799795 452.981