Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0071 ATGATGGACTCAAAAACTAGTGCTATAGCTCCCCCAAAGCACCGACAGAAGGTGTCTGGGGCCCAAACTGTAGAAACAAAAGACAACAAGCCTTGTTCATTGCAGGCTCAGAAGACAGGCAAACCTGAACTGGCTGCTCCTGGAAGTTCATTGAAGTCTCTGCAAATCACGTCGAAGCAGAAAACTGGGGAAACTTCGGAAAACAAGAAGTTGGGAATATCAAACCTAAAGGGGTCTGCTGATTCCTTGAGTAGTAAATGTGGTTCTGGACCTTCTGGTGCTTCTGTACCTGTTATTGACCAAGCATCTGGAGAAGTTGATCGTGCTGTTAATGAGAGCAGAGACTTGCAGGAAACCTTTACTGATCAAGAAAAGAAGACATCGGAATATGGAAATGTGAAGAACAGTTTTATTTCTGCTAAAGTTTGTGATGGGGCTAGCAGTCTTGCAAAGACCGGTGGAAGTGCCAAGATCTGTGATCGAGCTGATTTTGTTGAGAGTGGTAAGAGCAGTATTTGCAGAGGAAGTACAAGCAGTGATGTGAGTGATGAAAGTACATGTAGCAGTTTTAGTAGCGCCATTAACAAGCCGCACAAGGCTAATGATTTGAGATGGGAAGCTATTCAAGCTGTTCGAGCTAGAGATGGGGTGTTGGGTTTAGGTCATTTCAGACTACTGAAGAGGTTGGGTTGTGGGGATATTGGCAGTGTATATCTCTCTGAATTGAGTGGAACTAAATGTTATTTTGCAATGAAGGTAATGGACAAAGGGTCCCTTGCTAGTCGTAAAAAACTACTTCGTGCTCAGACTGAAAGAGAAATACTGCAGTCGCTGGACCACCCTTTCCTCCCAACTTTGTATACCCATTTTGACACAGAGAAGTTCTCGTGTTTGGTAATGGAATTCTGCCCAGGTGGAGACTTGCATACTCTTAGGCAGAGGCAGCCAGGGAAGCATTTCCCTGAGCAGGCAGTAAAATTTTATGTGGCAGAGATTCTACTGGCTTTGGAGTACCTCCACATGCTTGGGATTGTCTACCGTGATCTCAAGCCAGAAAATGTCCTTGTTAGGGACGATGGACATATTATGCTCTCTGATTTTGACCTTTCCCTCCGTTGTGCTGTTAGTCCAACCCTTGTTAAAACCTCATCCATGGATTCTGAGCCTTTAAGAAAGAATCCTGGATATTGTGTCCAGCCTGCATGTATTGAGCCACCTTCCTGCATCCAGCCATCCTGTGTTGCTCCTACTACATGTTTTTCACCCCGGCTCTTTTCTAGCAAATCAAAGAAGGAACGGAAATCCAAAATTGAAATTGGCAACCAAGTGAGTCCGTTACCGGAGCTCATTGCCGAGCCTACTGATGCGCGGTCTATGTCATTTGTTGGAACACATGAGTACTTGGCTCCTGAGATAATCAAGGGTGAAGGTCATGGGAGTGCAGTTGATTGGTGGACTTTTGGAATCTTTCTATATGAGCTGTTGTTTGGGAAAACACCGTTCAAGGGATCTGGAAACCGAGCTACCTTGTTTAATGTTGTAGGTCAGCCTCTGCGGTTTCCTGAATCACCTGTTGTCAGTTTTGCTGCAAGGGATCTGATAAGGGGGTTACTTGTAAAGGAACCTCAGCACAGATTGGCATACAAAAGAGGGGCTACTGAGATTAAGCAACATCCCTTTTTCGAAGGTGTGAATTGGGCATTGATCCGGTGTGCTACCCCCCCAGAGATCCCGAAGCCAGTAGAGTTTGAGAAGATACCTTCCCCAGCTTCGTCAGCCGGTGAAAAGGTTGTTCACCATATGTCAATTCCTAATCAGAAAGGTTCTGATAATTACCTTGAGTTTGATTTCTTCTAG 1857 0.4502 MMDSKTSAIAPPKHRQKVSGAQTVETKDNKPCSLQAQKTGKPELAAPGSSLKSLQITSKQKTGETSENKKLGISNLKGSADSLSSKCGSGPSGASVPVIDQASGEVDRAVNESRDLQETFTDQEKKTSEYGNVKNSFISAKVCDGASSLAKTGGSAKICDRADFVESGKSSICRGSTSSDVSDESTCSSFSSAINKPHKANDLRWEAIQAVRARDGVLGLGHFRLLKRLGCGDIGSVYLSELSGTKCYFAMKVMDKGSLASRKKLLRAQTEREILQSLDHPFLPTLYTHFDTEKFSCLVMEFCPGGDLHTLRQRQPGKHFPEQAVKFYVAEILLALEYLHMLGIVYRDLKPENVLVRDDGHIMLSDFDLSLRCAVSPTLVKTSSMDSEPLRKNPGYCVQPACIEPPSCIQPSCVAPTTCFSPRLFSSKSKKERKSKIEIGNQVSPLPELIAEPTDARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGKTPFKGSGNRATLFNVVGQPLRFPESPVVSFAARDLIRGLLVKEPQHRLAYKRGATEIKQHPFFEGVNWALIRCATPPEIPKPVEFEKIPSPASSAGEKVVHHMSIPNQKGSDNYLEFDFF 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0071 618 MobiDBLite consensus disorder prediction 50 70 - -
Ssu6g0071 618 Gene3D Transferase(Phosphotransferase) domain 1 454 579 - -
Ssu6g0071 618 Coils Coil 99 126 - -
Ssu6g0071 618 PANTHER FLIPPASE KINASE 1-RELATED 5 618 - -
Ssu6g0071 618 Gene3D Phosphorylase Kinase; domain 1 222 302 - -
Ssu6g0071 618 MobiDBLite consensus disorder prediction 1 70 - -
Ssu6g0071 618 Pfam Protein kinase domain 458 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0071 618 Pfam Protein kinase domain 224 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0071 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 344 356 IPR008271 GO:0004672|GO:0006468
Ssu6g0071 618 Gene3D Transferase(Phosphotransferase) domain 1 303 372 - -
Ssu6g0071 618 ProSiteProfiles Protein kinase domain profile. 223 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0071 618 CDD STKc_phototropin_like 222 585 - -
Ssu6g0071 618 SUPERFAMILY Protein kinase-like (PK-like) 201 589 IPR011009 -
Ssu6g0071 618 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 618 - -
Ssu6g0071 618 SMART serkin_6 223 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0071 618 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0071 Ssu-Chr6 1320440 1323341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0071 118 618 AGC Kinase Gene Family AT5G47750 83.499 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Ssu6g0071 Pkinase 3.4e-36 CL0016