Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0070 ATGGAAATGTCAAGGGAGAGTAGTGGTGAAGGACCAAGTTGGTTAAATGAATCAATTGCATCTATATGCAGAGGAGAGGAggggcTGGATGATATTTCCATTGACATTGAAGAAGATGTAGATTATCGAAGTGAGGAAGATGAATGTGTTGAAATAGAAGTTGAGGATGACTGTGAACAAAACTCAATTGATGGACGAAATCATGTTGAAATTAACAACGGGTGTACTATTAGTACTGTGTATGACATTCTTAGTTTGGATTTGAAGAATTTAACTCCTTATGAACTGAGGAACATTGAATTTATAAGTCTTGAAATGGCGTACAAGTTCTATTATTGGTTTGCTAGCATGAATGGGTTTGGTGCTAGAAAAAGCAAAgtagttaaaaacaaaaatggagaAACTTTACAGCAAACCTTTGTTTGTTACAGACAAGGTTTTAGAGAGGATCGTGGTTTAACTATGGAAAATCGTAAGCGTGATATCAAGTCGGAGACAAGGTGTGGATGTGAAGCGAAGCTTAGAGTGCATATAGATATGAATTCGAGGCTTTggtacataacatattttcttgatGACCACAACCATGCCTTACTAGAAGATAGACACTGCAGAATGTTGGCAAGTCATAGGACGATGACTGATTCAGATGTGATGCAATTGAATAATATGAGAGCAGTAGGTATAGGGACACCACACATATATGGATCACTTGCAAATCAATGTGGAGGCTATGATCGAGTTGGATTCCGTAGAAAAGATTTATACAACCAAATTGGAAGACAAAGGAAGTTGAAAAATGTGGATGCTAAAGTTGCATTACAATATCTTGCTGGTTTGGGTGTGAATGATCCCTTGATATTTTTTAGACACACGGTTGATAAGGATAATAGACTTCAACATTTGTTTTGGTCTGATGGCATTATGCAGATGGATTATAGGATATTTGGTGATGTGTTGGCATTTGACGCCACATATGGAAAGAATAAGTATGAATGCCCCCTGGTGATATTTTCTGGTGTCAACCATCATAATCATACTGTAGTGTTTGGTGCTGCGGTTGTTGCTAATGAAACAGAGGAAACCTATGTTTGGATACTTGAACGATTTTTAGAGGCCATGAAAGGGAAGTGTCCAATGTCAGTTATAACTGATGGAGACGTGGCAATAAGAAATTCAATCAGAAGGGTTTTACCTAATGCTCACCATAGACTGTGTGCATGGCACTTACTTCGCAATGCAACAACAAACGTAGGTAATCCTATATTTACTTCTGAGCTGAGAAAATGCATGCTTGGTGACTATGAAGTTGGTGAATTTAAAAGAAGATGGACAGAAATGATTTCAAAGTTTGAGCTTCAACATCATCCTTGGGTGTTAGAGTTGTACGAGAAGAGAACAATGTGGTGTACAGCTTATATAAGAGGTAGTTTTTTTGCTGGGTTTAGAACAACATCTAGATGTGAGGCATTGCACTCCCAAATTGCGAAGTTTGTTTACTCAAGATATAATCTAACAGAGTTGTTACAACACTTCTATCGTTGCTTGAATTTTATGCGGTACCGTGAGGTAGAAGCTGACTTTGAATCAATTCATGGTCAGTCAGTGTTGCGAACTCATTTTCAAAACCTAGAAAGGTATGCTGCTAATGTGTTTACAAGggagatatttaatttatttcgcCCAATACTCGATAGATCTGGTACTGTTCGAGTTGTTGGTTGCAAAAAGTCTTTTGAGTACTTGATATACACGGTGTCAAAGTATGAATCATCACAACGAGCGTGGCACGTGTCATTTCAACCATCAACTAATGATGTGAAGTGTTCTTGTCGAAGAATGGAATCGCTTGGTCTTCCATGTGATCACATATTGAGAGTTTTGGTTTATCTTAATATTTCGAAGTTGCCTAAATGTTTGGTACTTAAGCGGTGGACAAAGTCAGCAAAAGAAGATGTGCGGATTGACACAAACTCCAGTCATTTTTGGGGTTCTGAAAAAGATGCTAGATATTTGTCTTTGATGGAACACTTTAAAGATGTTAGTGTTCTTGCTGCTGAAAGTTTTGATGAGTATGATGACCAAAGGCAAAAGGCTATAAATGAACGTAATCATTTAATGGCTAAGAAGTCAGCTGAGATTGAAGGGAATGCTACAAGAAAGAGTCAAATAGTAAGTCTCAGTGTTAGCAATCCAGCAATTGTTAGAACGAAAGGTGGTCGATCTCATAATAATACAACATCTTCAGGTGGTAGGCATTCGAAGTTGATGAAAAAGTGCAGCAGTTGTAAACAACCTGGCCATAATCGGAGGAGTTGTCCCACAGTTGCCAACCATGGTGTAACTGTTGAAACTACAACAAGAAATTGGTTTCCAACTGAAGATGATGTCACAAATAGCATAACCATGGAGATGAATGATGAAATGGATTACCATGACAACGAAAATGAAGTTGGTGCTGAGTGTCATTCATTCTCGGCATCAACATACAACATCATTGATGATAGTTATATGCAAGCCTAG 2523 0.3706 MEMSRESSGEGPSWLNESIASICRGEEGLDDISIDIEEDVDYRSEEDECVEIEVEDDCEQNSIDGRNHVEINNGCTISTVYDILSLDLKNLTPYELRNIEFISLEMAYKFYYWFASMNGFGARKSKVVKNKNGETLQQTFVCYRQGFREDRGLTMENRKRDIKSETRCGCEAKLRVHIDMNSRLWYITYFLDDHNHALLEDRHCRMLASHRTMTDSDVMQLNNMRAVGIGTPHIYGSLANQCGGYDRVGFRRKDLYNQIGRQRKLKNVDAKVALQYLAGLGVNDPLIFFRHTVDKDNRLQHLFWSDGIMQMDYRIFGDVLAFDATYGKNKYECPLVIFSGVNHHNHTVVFGAAVVANETEETYVWILERFLEAMKGKCPMSVITDGDVAIRNSIRRVLPNAHHRLCAWHLLRNATTNVGNPIFTSELRKCMLGDYEVGEFKRRWTEMISKFELQHHPWVLELYEKRTMWCTAYIRGSFFAGFRTTSRCEALHSQIAKFVYSRYNLTELLQHFYRCLNFMRYREVEADFESIHGQSVLRTHFQNLERYAANVFTREIFNLFRPILDRSGTVRVVGCKKSFEYLIYTVSKYESSQRAWHVSFQPSTNDVKCSCRRMESLGLPCDHILRVLVYLNISKLPKCLVLKRWTKSAKEDVRIDTNSSHFWGSEKDARYLSLMEHFKDVSVLAAESFDEYDDQRQKAINERNHLMAKKSAEIEGNATRKSQIVSLSVSNPAIVRTKGGRSHNNTTSSGGRHSKLMKKCSSCKQPGHNRRSCPTVANHGVTVETTTRNWFPTEDDVTNSITMEMNDEMDYHDNENEVGAECHSFSASTYNIIDDSYMQA 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0070 840 Pfam MULE transposase domain 319 413 IPR018289 -
Ssu6g0070 840 Pfam FAR1 DNA-binding domain 109 199 IPR004330 -
Ssu6g0070 840 PANTHER OS02G0262500 PROTEIN 99 697 - -
Ssu6g0070 840 MobiDBLite consensus disorder prediction 738 755 - -
Ssu6g0070 840 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 99 697 IPR031052 GO:0006355
Ssu6g0070 840 MobiDBLite consensus disorder prediction 738 772 - -
Ssu6g0070 840 Pfam SWIM zinc finger 584 631 IPR007527 GO:0008270
Ssu6g0070 840 ProSiteProfiles Zinc finger CCHC-type profile. 759 774 IPR001878 GO:0003676|GO:0008270
Ssu6g0070 840 ProSiteProfiles Zinc finger SWIM-type profile. 584 632 IPR007527 GO:0008270
Ssu6g0070 840 SMART 26again6 607 634 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0070 Ssu-Chr6 1278110 1280959 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu6g0070 MULE 9e-27 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0070 - - ccaj:109791994 875.544