Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0069 ATGAAACGCCCAAACGACGACGTCGCCGCGGCAACCGCGAAGCCAATGTTCCTAACCAAAGCCCAGCGCGAGCAATTGGCCCTCCAACGCCGCCAGGAGGAAGTAGCGGAGCAGAAGCGCCACCAGGAGCAGCTCCTTTCCCGCAGCCGCTCCTCCGATCCGAAACCCTCATCGGACAGCAGGGACAGGGAGCGTGACAGAGACAGGGACAGGGACAGGGAGCGTGACAGAGACAGGGACAGGGAGCGTGACAGGGACAGAGAGCGTGAGCGAGAGCGAGAGCGCGAGCGCGAGAGGGCACGCGATCGGGACCGCGAGGCGGAGCGCCGCAACAGAGAGAGGGAGCGCGAAGAGGAGAGCCGGGCCCGGGAGCGGGCCCGGTTGGAGAAGCTGGCGGAGAGAGAGCGCGAGAAGGAGCTGGATTCCATCAAGGAGCAGTACCTGGGCTCGAAGAAGCCCAAGAAGCGCGTGATCAAGCCCAGCGAGAAGTTCCGTTTCTCGTTCGACTGGGAGAACACGGAGGACACCTCGCGCGACATGAACTCCCTGTACCAGAACCCTCACGAGGCCCAGCTGCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGACCGCCGCGAGCAGAAGAAGCTGGCCGCGAAGAACGAGAAGGAGATGCGCGAGCAAATCCGGAAGAAGGACGGCATCGAGGAGAAGCCCGAGGAGGCCGACGCCCAGCGCCGCAAGGAGGCCGCCGCCGACCTCTACGACACCTTCGACATGAGAGTCGACCGCCACTGGAGCGAGAAGAAGCTCGAGGAGATGACCGAGAGGGATTGGCGCATTTTCAGAGAGGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCCATGAGAAGCTGGAATGAGAGCAAGTTGAGCCACGAGCTTCTCAAGGCCGTGGAGAAGGCTGGGTACAAGACCCCTTCTCCTATTCAGATGGCAGCCATTCCGCTTGGTTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCTGGGAAAACCGCTGCGTTTGTTCTTCCCATGTTGAGTTACATCACCAGGCTTCCTCCCATTAGTGAGGACAACGAGGCCGAGGGCCCCTATGCTGTGGTCATGGCCCCCACTCGCGAGCTCGCCCAGCAGATTGAGGATGAGACTGTTAAGTTTGCTCAGTATCTGGGCATCAAGGTGGTGTCCATTGTTGGTGGACAGTCCATTGAGGAACAAGGGTTTAAGATTAGGCAGGGGTGTGAGATTGTGATTGCCACTCCCGGTCGATTGATTGATTGTTTGGAGCGGCGCTATGCTGTTCTTAACCAGTGCAATTATGTTGTTCTTGATGAGGCTGATCGCATGATTGACATGGGGTTTGAGCCACAGGTGATGGGTGTCCTTGATGCCATGCCTTCCAGCAATCTCAAACCAGAGAATGAGGATGAGGAGCTTGATGAGAAGAAGATCTACCGGACCACCTATATGTTCAGCGCCACCATGCCGCCTGCGGTGGAGAGGCTTGCTAGGAAATATTTGAGGAACCCTGTTGTGGTGACCATTGGCACTGCTGGAAAGGCAACTGACCTTATCAGCCAGCATGTGATTATGATGAAGGAGTCTGAGAAATTTTACAAGCTTCAGAGGTTGCTTGATGAGCTTAACGACAAGACCGCCATTGTGTTTGTTAATACCAAGAAGAATGCGGATATGGTTGCCAAGAATTTGGATAGGGAAGGGTACCGCGTGACTACTTTGCATGGAGGGAAGTCGCAGGAGCAGAGGGAGATTAGTCTTGAAGGGTTTAGGACCAAGCGATATAATGTGCTTGTTGCTACTGATGTTGCTGGACGTGGGATTGACATACCTGATGTGGCTCATGTCATCAACTATGATATGCCTGGGAATATTGAAATGTACACGCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACGGGTGTGGCTACAACATTCCTGACTCTTCAGGACTCTGATGTCTTTTATGACCTCAAGCAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAACTGGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGAACTATTCCTGACAGACCACCTAGACGAAATGACACTGTTTTTGTGCATtag 2142 0.5504 MKRPNDDVAAATAKPMFLTKAQREQLALQRRQEEVAEQKRHQEQLLSRSRSSDPKPSSDSRDRERDRDRDRDRERDRDRDRERDRDRERERERERERERARDRDREAERRNREREREEESRARERARLEKLAEREREKELDSIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGIEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWNESKLSHELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPISEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDREGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGTIPDRPPRRNDTVFVH 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0069 713 CDD SF2_C_DEAD 531 660 - -
Ssu6g0069 713 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 672 IPR027417 -
Ssu6g0069 713 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 448 456 IPR000629 -
Ssu6g0069 713 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 324 519 IPR014001 -
Ssu6g0069 713 MobiDBLite consensus disorder prediction 26 140 - -
Ssu6g0069 713 Gene3D - 254 523 IPR027417 -
Ssu6g0069 713 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 293 321 IPR014014 GO:0003724
Ssu6g0069 713 Pfam DEAD/DEAH box helicase 318 508 IPR011545 GO:0003676|GO:0005524
Ssu6g0069 713 Coils Coil 90 141 - -
Ssu6g0069 713 PANTHER - 89 706 - -
Ssu6g0069 713 MobiDBLite consensus disorder prediction 691 713 - -
Ssu6g0069 713 SMART ultradead3 312 534 IPR014001 -
Ssu6g0069 713 Coils Coil 205 231 - -
Ssu6g0069 713 Pfam Helicase conserved C-terminal domain 545 651 IPR001650 -
Ssu6g0069 713 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 546 690 IPR001650 -
Ssu6g0069 713 Gene3D - 524 711 IPR027417 -
Ssu6g0069 713 SMART helicmild6 570 651 IPR001650 -
Ssu6g0069 713 Coils Coil 18 38 - -
Ssu6g0069 713 CDD DEADc_DDX23 304 520 - -
Ssu6g0069 713 MobiDBLite consensus disorder prediction 1 140 - -
Ssu6g0069 713 MobiDBLite consensus disorder prediction 207 242 - -
Ssu6g0069 713 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 89 706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0069 Ssu-Chr6 1264540 1266681 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0069 291 673 Eukaryotic Initiation Factors Gene Family AT3G19760 32.031 5.57e-62 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0069 K12858 - gmx:100799264 1142.87