Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0051 ATGGATCCTATCAGTGAGGGGAACACTCTCACCAACAACCCTAATCTTGCCTCCAAACAGCGTTTACGCTGGACGAATGAGCTACACGAACGCTTTGTTGATGCCGTGGCGCAACTTGATGGTCCAGATCGTGCTACTCCTAAAGGGGTCCTCAGAGTTATGGGTGTACAGGGCTTAACAATATACCATGTCAAAAGCCACTTACAGAAATATCGACTAGCAAAATGCCTACCTGACTCCTCATCAGATGGGACAAAAGGCGACAAGAAAGAAACAGGGGATATGCTTTCCAATCTAGATGGTTCACCTGGGATGCAGATTACTGAAGCGCTAAAGCTTCAAATGGAGGTACAGAAGCGACTGCATGAGCAATTGGAGGTGCAGAGACAGCTACAATTACGAATAGAAGCCCAGGGTAAATACTTGAAGAATATTATCGAAGAGCAACAGCAATTCAGTGGGGTTCTTTCAGAAGCACCTGACTCTGGGGTTGCAGCTCCAGTTCCTGGAGATATGTGCCAAGAACCTGATAATAAGACTGACCCAGCAACCCCTGCCCCCACCTCTGAGTGCTCCCTTCTGGAAAAAGATTCCAAAGAGCGTGCGCCAGCTAAGAGTGTTTCAATTGATGAATCTTTTTCATCCCACCATGAACCATTGACACCAGATTCTAGTTGCCATGTTAGTTCCCCTATTGACAGCCCTAAAGGGGAGAGGTCTACAAAAAAGCAACGGGTGAGCATGGAGGGAGCATATTCTGAGCCAGAAATGGTGCTTCCGCACCAGATACTTGAGTCAAGCATGTCATCATATCAGCAACCAAACGCAGTTTTCCTTACCCAAGAGCAATTTCGTCCTTCATTGGGTTTGTCTGCAATAAGTGATAAGGCGTTGGAGCAGGATGGTAACAGTAGTCTGTGA 921 0.468 MDPISEGNTLTNNPNLASKQRLRWTNELHERFVDAVAQLDGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKCLPDSSSDGTKGDKKETGDMLSNLDGSPGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKNIIEEQQQFSGVLSEAPDSGVAAPVPGDMCQEPDNKTDPATPAPTSECSLLEKDSKERAPAKSVSIDESFSSHHEPLTPDSSCHVSSPIDSPKGERSTKKQRVSMEGAYSEPEMVLPHQILESSMSSYQQPNAVFLTQEQFRPSLGLSAISDKALEQDGNSSL 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0051 306 Pfam Myb-like DNA-binding domain 22 72 IPR001005 -
Ssu6g0051 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7 1 295 - -
Ssu6g0051 306 SUPERFAMILY Homeodomain-like 18 73 IPR009057 -
Ssu6g0051 306 Pfam MYB-CC type transfactor, LHEQLE motif 105 151 IPR025756 -
Ssu6g0051 306 Coils Coil 108 128 - -
Ssu6g0051 306 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 16 76 IPR017930 -
Ssu6g0051 306 MobiDBLite consensus disorder prediction 157 254 - -
Ssu6g0051 306 MobiDBLite consensus disorder prediction 77 103 - -
Ssu6g0051 306 MobiDBLite consensus disorder prediction 208 235 - -
Ssu6g0051 306 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 1 295 IPR044848 GO:0003700
Ssu6g0051 306 Gene3D - 18 76 - -
Ssu6g0051 306 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 19 74 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0051 Ssu-Chr6 1063334 1066061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0051 54 278 G2-like Transcription Factor Family AT2G01060 65.929 6.65e-93 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu6g0051 Myb_DNA-binding 5.9e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0051 - - hbr:110654981 458.759