Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0048 ATGGAGGATGAAGATCAAATATCTCCGGCGGATGGCGTTGACGTTAGCGGTGCGAGCAAAGAGCAGCAGGCGGCGGGAGTGGGGATTCTTCTTCAGATCATGATGTTGGTTTTGTCTTTCGTCTTAGGTCACATCCTTCGTCGCAAAAAGATTTATATTCTTCCCGAAGCCAGCGCTTCTCTTCTCATTGGCTTACTCGTTGGTACACTCGCTAACATTTCTCACACTCAAACTAGTATCAGCTTTACTCAGTCTGGCTTCAGTCTCTCGCCTAAACCTTTCTTCTCTAATTTTGGAGCTATTGTCACATTTGCTATATTCGGCACCTTTTTGGCTTCCATTGTGACGGGTGTCTTAGTTTATCTTGGTGGATTTATATACCTCATGTACAGACTACCTTTTGTTGAGTgtctaatgtttggtgcactTATATCCGCAACTGATCCTGTTACTGTTTTGTCCATATTTCAGGAGCTTGGCACAGATGTCAATCTATATGCCTTGGTTTTTGGAGAATCTGTTTTGAATGATGCAGTAAGATTCtattactacaaaaaaaaaattcctgTGGTTAAAAATCATCCATCTGGACAAAATTTCTTAATGGTGGTTGTTAGATTTTTGGAGACTTTTGTTGGGTCAATGTCTGCTGGttggttttataaattttacctaaTGTTCTCTTTATGCAGTGTTTTGTTAGTTGAATTACCAAACTTGGAGAGctgtctttttgttcttttcccaTATTTCTCgTACATGCTTGCAGAAGGTCTTGGACTGTCTGGTATTGTATCAATATTGTTCACAGGAATGGTCATGAAGCAttacacatattcaaatttgtCATGTAGTTCTCAAAGATTTGTCTCTGCTTTTTTTGAGTTGATATCATCATTAGCAGAGACATTTGTATTTATCTACATGGGCTTTGATATTGCTATGGAGAAACATAGCTGGTCACATGTTGGATTTATATTCTTCTCCATTATATTCATTGGAATTGCAAGAGCGGCCAATGTGTTCTGTTGTGCTTATCTAGTCAACTTGATCAGACCTGCCCATCGACAAATACCTCCAAAACACCAGAAAGCACTTTGGTATAGTGGACTTCGAGGGGCAATGGCCTTTGCCCTTGCTCTGCAATCAATTCATGATCTTCCAGAAGGACATGGACAGACCATCTTAACTGCAACTACAGCAATAGTTGTTTTGACGGTATTACTGATTGGTGGTTCAACAGGCACCATGCTGGAAGCTTTAGAAGTTGTAGGTAGTGACAGTCATATTAACGAGAGTCCTTTGGCTTCAGTTAGCACCAGAACGAATTTTGAGGGGAACAATGGTTATATTTCTCCTGATGACGAAGAACTGTCATCAGGGAACAAAATCAAGATGAAGCTACAAAAATTCCAAAGGAGGTATCGCCTGTGCTCTGAAACTGAAGATATTCTAAATGTATGTTTACATTAA 1473 0.3761 MEDEDQISPADGVDVSGASKEQQAAGVGILLQIMMLVLSFVLGHILRRKKIYILPEASASLLIGLLVGTLANISHTQTSISFTQSGFSLSPKPFFSNFGAIVTFAIFGTFLASIVTGVLVYLGGFIYLMYRLPFVECLMFGALISATDPVTVLSIFQELGTDVNLYALVFGESVLNDAVRFYYYKKKIPVVKNHPSGQNFLMVVVRFLETFVGSMSAGWFYKFYLMFSLCSVLLVELPNLESCLFVLFPYFSYMLAEGLGLSGIVSILFTGMVMKHYTYSNLSCSSQRFVSAFFELISSLAETFVFIYMGFDIAMEKHSWSHVGFIFFSIIFIGIARAANVFCCAYLVNLIRPAHRQIPPKHQKALWYSGLRGAMAFALALQSIHDLPEGHGQTILTATTAIVVLTVLLIGGSTGTMLEALEVVGSDSHINESPLASVSTRTNFEGNNGYISPDDEELSSGNKIKMKLQKFQRRYRLCSETEDILNVCLH 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0048 490 PANTHER SODIUM/HYDROGEN EXCHANGER 13 476 IPR018422 GO:0006812|GO:0015299|GO:0016021
Ssu6g0048 490 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 34 475 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu6g0048 490 Pfam Sodium/hydrogen exchanger family 35 419 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu6g0048 490 PRINTS Na+/H+ exchanger signature 141 151 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu6g0048 490 PRINTS Na+/H+ exchanger signature 101 109 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu6g0048 490 PRINTS Na+/H+ exchanger signature 86 100 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Ssu6g0048 490 PANTHER SODIUM/HYDROGEN EXCHANGER 6 13 476 - -
Ssu6g0048 490 Gene3D - 134 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0048 Ssu-Chr6 1004998 1012286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0048 19 421 Antiporters AT3G05030 30.649 3.76e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0048 K14724 - gmx:100810105 714.531