Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0043 ATGCTTCTCAGTACGAAACACTTTCATTTTGGGAAGAATAAGCTTTCAGGCACTATTCCTGCTCAACTTTTTAGCTCGGAAATGACTCTTATTCATTTGCTTTTTGAAAACAATCAATTTGAGGGCAACATTCCTTCTACTATTGGACTTGTTCAGAGTCTAGAGGTGGTGCGCCTTgatgacaattttttaagtgGACATGTGCCTCTGAACATCAACAATCTTACCCACGTCTATGAGCTGTACTTGCTCAACAATAAGCTGTCAGGTCCCCTGCCAAACCTTGAGGGAATGAATCAACTCACCTacttggATATGAGCAACAATAGTTTTGATGAATCGGATTTTCCATTATGGATTTCGACTCTCAAGTCTCTATCAACACTAATTATGGAAAAGGCAGGACTAGAAGGGCAGATTCCTGATTCTTTGTTTAGCCTTTCCGACTTAAAGAACGTGAAACTAAAAGATAATAGAATCAATGGAAGCCTGGACATTGGCAACACATACAGCAAGCAACTGCGACTCGTTGATTTGCAGGATAATAGAATTGAAGACTTCAAGCAACAAGACACGGTAGCCTCCAGTGTCAAGATAATACTTGTTCATAACCCAGTTTGCGAGGAATCGGGAGTGACAAGGAGTTACTGCTCCAACCCAGAGCTGATTGTACCATCTACAACAACAAAGAATTGTGAACCTGCTACCTGCAGCTCAGCTCAGGTTTTCAGCGCCCACTGCAAATGCTCATATCCATACACAGGAATTTTAAGGTTCAGAACACCTTCTTTCTGGGACTGGGGAAATGAAACCTCACTCCAGGAACATCTCATGCATATCTTTCAGTTTTGTCATCTACCTGTGGATTCAGTTTCTTTGAGCACTCGCAATAACTACCCATCTCAGTATCTTCAATTCACCATACAAATCTTCCCATCAAGCCGTGATTATTTCAACCAAGCAGAGATTTTGAGCATATGTTCCGCACTAGGCAACCTGACCTCGGATgcgttttatttttatcctgaTGAATATGGACACTATGAAGAACCTGCTGAGTCAAGCAAATCATCAAATGCTGGCATCATAATTAGAGCAACAATTGGTGGTTCTTCTGCTGCCCTGCTTGTGTTACTACTCCTCGCAGGCGGTTATGCTTTCTGGCAAAAGAAAAAGGCAGAAAAAGCAATCCAACAAAATTATCCATTTGGAAGCGGGGACCCGAGTGACAGCAATAGTAGCATCCCACAGTTAAAAGGAGCAAGGAGATTCTCTTTTGAAGAGCTTCAGAAATACACCAACAAATTTTCGCAAGATAATGATATTGGATCCGGGGGCTATGGAAAGGTTTATCGGGGAATTCTACCCAATGGGCAACTCATAGCCATAAAACGAGCTCAAAAAGAATCTATGCAGGGAGGACTTCAGTTTAAAGCTGAGGTTGAGCTTCTATCAAGGGTCCACCATAAGAATCTTGTTAGTCTTGTGGGTTTCTGTTTTGAGCGAGGAGAACAAATTCTGGTGTATGAGTATGTTTCAAAAGGAACTTTAAAGGATGCTATCTTAGGGAAATCAGTAAGGCTGCACTGGATTAGACGGCTAAAAATAGCACTTGATATTGCAAGGGGCTTAGATTATCTTCATCAACATGCCAACCCTCCTATCATCCACAGGGACATCAAATCAAACAACATTTTGCTGGACGAGCGTTTGAATGCTAAAGTTGCTGATTTTGGTCTTTCCAAGCCTATGGTTGATTTTGATAAGGATCACGTTACCACTCAAGTAAAAGGGACGATGGGTTACTTGGATCCAGAGTATTATACAAGTCAGCAACTGACGGAGAAAAGTGATGTTTATAGCTATGGAGTGCTAATGTTGGAGTTGATAACTGCAAAGAGACCAATAGAACGAGGGAAGTATATTGTGAAGGTGGTTAGGAATGATATTGATAAGACGAAAGATTTATATGGTCTTGAGAAAATTATGGACCCAACCATTGGTCTAGGGTCAACATTGAAGGGTTTTGAGATGTTTGTGGATCTTGCAATGAAGTGTGTTGAAGATTCACGCCCTGACAGGCCTACAATGAATGATGtggtaaaagaaattgaaaacgTGTTGCTGTCAGCTGCTTTGAACTGCTCAGTTGAATCAACTTCATCTAGCTACGACGAGGTAAGTGTGCAATTCTCACCATCCCTACAGCAATGA 2214 0.4047 MLLSTKHFHFGKNKLSGTIPAQLFSSEMTLIHLLFENNQFEGNIPSTIGLVQSLEVVRLDDNFLSGHVPLNINNLTHVYELYLLNNKLSGPLPNLEGMNQLTYLDMSNNSFDESDFPLWISTLKSLSTLIMEKAGLEGQIPDSLFSLSDLKNVKLKDNRINGSLDIGNTYSKQLRLVDLQDNRIEDFKQQDTVASSVKIILVHNPVCEESGVTRSYCSNPELIVPSTTTKNCEPATCSSAQVFSAHCKCSYPYTGILRFRTPSFWDWGNETSLQEHLMHIFQFCHLPVDSVSLSTRNNYPSQYLQFTIQIFPSSRDYFNQAEILSICSALGNLTSDAFYFYPDEYGHYEEPAESSKSSNAGIIIRATIGGSSAALLVLLLLAGGYAFWQKKKAEKAIQQNYPFGSGDPSDSNSSIPQLKGARRFSFEELQKYTNKFSQDNDIGSGGYGKVYRGILPNGQLIAIKRAQKESMQGGLQFKAEVELLSRVHHKNLVSLVGFCFERGEQILVYEYVSKGTLKDAILGKSVRLHWIRRLKIALDIARGLDYLHQHANPPIIHRDIKSNNILLDERLNAKVADFGLSKPMVDFDKDHVTTQVKGTMGYLDPEYYTSQQLTEKSDVYSYGVLMLELITAKRPIERGKYIVKVVRNDIDKTKDLYGLEKIMDPTIGLGSTLKGFEMFVDLAMKCVEDSRPDRPTMNDVVKEIENVLLSAALNCSVESTSSSYDEVSVQFSPSLQQ 737
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0043 737 Pfam Protein kinase domain 437 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0043 737 SUPERFAMILY Protein kinase-like (PK-like) 422 718 IPR011009 -
Ssu6g0043 737 SMART serkin_6 436 713 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0043 737 ProSiteProfiles Protein kinase domain profile. 436 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0043 737 CDD STKc_IRAK 442 706 - -
Ssu6g0043 737 ProSitePatterns Protein kinases ATP-binding region signature. 442 464 IPR017441 GO:0005524
Ssu6g0043 737 PANTHER - 2 724 - -
Ssu6g0043 737 Gene3D Phosphorylase Kinase; domain 1 407 511 - -
Ssu6g0043 737 Gene3D Ribonuclease Inhibitor 96 243 IPR032675 -
Ssu6g0043 737 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 2 724 - -
Ssu6g0043 737 ProSitePatterns Serine/Threonine protein kinases active-site signature. 555 567 IPR008271 GO:0004672|GO:0006468
Ssu6g0043 737 Gene3D Ribonuclease Inhibitor 1 95 IPR032675 -
Ssu6g0043 737 Gene3D Transferase(Phosphotransferase) domain 1 512 724 - -
Ssu6g0043 737 SUPERFAMILY L domain-like 7 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0043 Ssu-Chr6 905688 912080 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0043 1 708 Receptor kinase-like Gene Family AT1G79620 49.799 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Ssu6g0043 Pkinase 1.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0043 - - gmx:100811702 893.264
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0043 6 905688 912080 Ssu1g1051 1 22678893 22688015 PCT