Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0041 ATGAGCAACAATAGTTTTAAACCATTGGATTTTCCAGGATGGTTTTCAACTCTTATGTCCTTAACAAATTTAAAGATGGAGAGAACACAACTTCAAGGACAAGTTCCTACTTCTTTGTTTGCACTTCTCAGTTTACAGACTGTGGTGCTAAAAGACAACAAAATAAATGGAACCTTGGATATCGGCTCCTCCTACAATAACCAGCTGCGACTTGTTGACTTGGAGACTAATTCAATTGACAGCTTTGAGCAAAACGGAGTTCCAAATGTCAAGATAATACTTAAAGATAACCCAATTTGCCTAGAAAATGGAGAAGGAGGAAGCTACTGCTCCTCCTCTCAATCCAATGTCTCATATTCAACACCACCAAATAACTGTCAGCCTGGTACCTGCAGTTCAGAACAGATTTCTAGTCCCAACTGTATATGCGCATATCCATATACGGGAACCTTTACTTTCATGTTACCTTCCTTTTCGGACTTTGATAACAAAACTTACTACTTAATGCTTGAGGAGGATCTTATGCAGTCTTTTAAGTCTTATTTTCTACCTGTGGATTCGGTTTTGTTGAGCCAACCAAATAAGGATTCGAATCAGTATCTCGAACTGAGCTTACAAGTCTTCCCATCAGGACAAGATCATTTCAATCGAACAGGGACTTTTAGCATTGGTTTTCTGCTAAGCAGCCAGACTTTTCAGCCTCCTAAAGTTTTTGGACCATCTTATTTTCTTGCAGATAAATATGAACACTTTGGGAACTCTGAAGGATGGACTGAATCGAGTAAATCTTCAAACATTGGAATCATAATTGGGGCAGCAGTTGGTGGTTCGGTCTTGCTAGTGTTACTACTCCTAGCAGGTCTTTATGCTTTCCGCCAAAAGAAAAGGGCTGAAAAAGCAATTGGACAAAGCAATCCTTTTAGACGCTGGAATACAGTTGAGAGCAACAGTGAGATCCCTCAGTTGAAAGAAGCAAGGATGTTTTCTTTTGAAGAGCTtaaaaaatacaccaaaaatttttctcaaatcaatGACATTGGATCTGGGGGTTTTGGGAAGGTCTTAAATGCTACTTTTAAGCTTAAATGTGCTATTGTGATTTAG 1104 0.3822 MSNNSFKPLDFPGWFSTLMSLTNLKMERTQLQGQVPTSLFALLSLQTVVLKDNKINGTLDIGSSYNNQLRLVDLETNSIDSFEQNGVPNVKIILKDNPICLENGEGGSYCSSSQSNVSYSTPPNNCQPGTCSSEQISSPNCICAYPYTGTFTFMLPSFSDFDNKTYYLMLEEDLMQSFKSYFLPVDSVLLSQPNKDSNQYLELSLQVFPSGQDHFNRTGTFSIGFLLSSQTFQPPKVFGPSYFLADKYEHFGNSEGWTESSKSSNIGIIIGAAVGGSVLLVLLLLAGLYAFRQKKRAEKAIGQSNPFRRWNTVESNSEIPQLKEARMFSFEELKKYTKNFSQINDIGSGGFGKVLNATFKLKCAIVI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0041 367 Gene3D Ribonuclease Inhibitor 1 133 IPR032675 -
Ssu6g0041 367 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE-RELATED 1 359 - -
Ssu6g0041 367 SUPERFAMILY L domain-like 2 82 - -
Ssu6g0041 367 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 1 359 - -
Ssu6g0041 367 SUPERFAMILY Protein kinase-like (PK-like) 308 360 IPR011009 -
Ssu6g0041 367 Gene3D Phosphorylase Kinase; domain 1 310 367 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0041 Ssu-Chr6 888517 890213 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0041 1 349 Receptor kinase-like Gene Family AT5G49760 47.143 9.80e-91 290
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0041 - - gmx:100811702 554.288
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g0041 6 888517 890213 Ssu1g1052 1 22697958 22704242 PCT