Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0040 ATGTGTAAATGTCCACAGGTTTATAAGGGAACCCTTCCCAATGGGCAATTGATAGCAATAAAACGAGCTCAAAAAGAATCTATGCAGGGGAAGCTTGAGTTTAAAGCGGAGATTGAGCTCCTATCAAGGGTCCACCATAAGAATCTTGTCAGCCTTGTGGGATTCTGCTTTGAGCAAGGAGAACAGATGCTGATTTATGAATATGTTCAAAATGGAAGTTTAAAGGACGCTCTCTCAGGGAAGTCAGGAATTAAATTAGATTGGATTAGAAGGCTAAAGTTGCCCTTGGTACTGCCCGGGGTTTGGCTTATCTTCACGAACTTGTTAATCCTCCCATCATACATAGGGACATCAAATCAAACAATATTTTGTTGGATGACCGCCTAA 387 0.4134 MCKCPQVYKGTLPNGQLIAIKRAQKESMQGKLEFKAEIELLSRVHHKNLVSLVGFCFEQGEQMLIYEYVQNGSLKDALSGKSGIKLDWIRRLKLPLVLPGVWLIFTNLLILPSYIGTSNQTIFCWMTA 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0040 128 PANTHER OS01G0253100 PROTEIN 7 94 IPR045271 GO:0004714|GO:0006468
Ssu6g0040 128 Pfam Protein tyrosine and serine/threonine kinase 6 88 IPR001245 GO:0004672|GO:0006468
Ssu6g0040 128 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0040 128 PANTHER KINASE PBS1, PUTATIVE-RELATED 7 94 - -
Ssu6g0040 128 SUPERFAMILY Protein kinase-like (PK-like) 6 94 IPR011009 -
Ssu6g0040 128 Gene3D Phosphorylase Kinase; domain 1 3 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0040 Ssu-Chr6 887312 888183 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0040 12 96 Receptor kinase-like Gene Family AT5G49760 77.647 6.63e-42 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Ssu6g0040 PK_Tyr_Ser-Thr 8.5e-14 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0040 - - gmx:100811702 167.548