Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0039 ATGGTTGATTGTGAAAAAGATCATGTTACCACTCAAGTTAAAGGAACAATGGGTTACTTGGATCCAGAGTATTATATGTCTCAACAATTGACTGAAAAGAGTGATGTGTATAGCTTTGGAGTGCTAATGTTGGAGCTGATATCTGCAAGAAGGCCATTGGAACGAGGGAGGTATATTGTGAAAGAGGTTAGGAATGCACTTGATAAGACAAAAGTGTTATATGGTCTTcatgaaattattgatccaGCCATTGGTTTAGCGTCCACACTGAGCGCTTTTGACAAGTTTGTGGATATGACCCTGAAATGTGTTGAAGAGTCAGGTTCTGACAGGCCTAAAATGAGCGATGTGGTAAGAGAAATCGAGAACATCTTGAAGTCAGCTGGTGCAAACCCCACTGAAGAATCACCGTCCATCTCTTCTAGTTATGAGGAGGTAAGCCGAGGGAGTTCCAGCCATCCTTATAGTAGCAACGACACCTTTGATTTGAGTGCAGGACTTCCATATCCAAAAGTTTACCCTaagtaa 528 0.4034 MVDCEKDHVTTQVKGTMGYLDPEYYMSQQLTEKSDVYSFGVLMLELISARRPLERGRYIVKEVRNALDKTKVLYGLHEIIDPAIGLASTLSAFDKFVDMTLKCVEESGSDRPKMSDVVREIENILKSAGANPTEESPSISSSYEEVSRGSSSHPYSSNDTFDLSAGLPYPKVYPK 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0039 175 Gene3D Transferase(Phosphotransferase) domain 1 2 148 - -
Ssu6g0039 175 ProSiteProfiles Protein kinase domain profile. 1 125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu6g0039 175 MobiDBLite consensus disorder prediction 125 175 - -
Ssu6g0039 175 MobiDBLite consensus disorder prediction 129 163 - -
Ssu6g0039 175 PANTHER - 6 156 - -
Ssu6g0039 175 SUPERFAMILY Protein kinase-like (PK-like) 8 156 IPR011009 -
Ssu6g0039 175 PANTHER RECEPTOR-LIKE PROTEIN 55 6 156 - -
Ssu6g0039 175 Pfam Protein tyrosine and serine/threonine kinase 8 120 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0039 Ssu-Chr6 886552 887276 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0039 3 175 Receptor kinase-like Gene Family AT5G49760 53.448 3.41e-58 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Ssu6g0039 PK_Tyr_Ser-Thr 1.1e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0039 - - gmx:100811702 306.219