Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0036 ATGGCAATTGCAGCGGCAAACTCATCACCCACCATGAGCCTTAGCCATAGCCAGAGCCAAGAGGAGGTGACCACCGCCTCCACCACcaacgacaacaacaacaataacaataacaataacaagcCCGATGATCACGAGCACGACATGGTCATGCCCGGCTTTCGCTTCCACCCAACTGAAGAAGAGCTCGTGGAATTCTACCTTCGCCGTAAGGTGGAGGGCAAGCGTTTCAACGTTGAGCTCATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTcctgCCTTGGCAGCTATTGGTGAGAAGGAATGGTACTTCTATGTGCCAAGAGATAGAAAGTATCGCAACGGTGATCGTCCCAATCGTGTTACTACCTCTGGGTATTGGAAGGCAACAGGAGCTGACAGGATGATCCGAACCGAGAATTTTCGCTCTATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGGAAAGCTCCCAAAGGAATCCGAACCAGTTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACTGAACGATATCAAAAGGCTGAGATATCGCTTTGCCGTGTGTACAAGAGAGCTGGGGTGGAGGACCATCCCTCCCTCCCTCGCTGTCTCCCAACCAGGCCATCCTCATCAAGAGCTTCTTCACATTCTGACAATAAGAAGCACAATGAAATGGTTCACCACAACATGGGATTTGTGGGACAATCAAAGCCAACCGATCAGCTAGTTGACAAATTGAATGAAACGGAAGCAAGCAGCGATGTCAACACAGCTCTTGGACTTTCCAAATACAATGCTTACCGTGCTGCAATGGGTGCACTCAGCACCACAATGGGACTTCCAATGGACGAGGAAGGGTTGATGATGATGCAGCATCAGCAATCTAAGCAAGCAACACATGCAGCCCCGGGTATCAGCACAATCTTCTCTGCTGGCCCTTCTGGTTCCAACAGTGGAGTAGCGAATATGGATGATCTGAATAGGCTAATGAGTTATCAACAGCAGTACTACAATGTTCAAAGCCATCCCAATCAGTTCTCTACTTTGCTGATGCAACCATCACCTGTAATGTCTCTCAACTCGCTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTGTGGGAGTGGAATCCAATCCCCGAGCCACCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA 1203 0.4722 MAIAAANSSPTMSLSHSQSQEEVTTASTTNDNNNNNNNNNKPDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASSHSDNKKHNEMVHHNMGFVGQSKPTDQLVDKLNETEASSDVNTALGLSKYNAYRAAMGALSTTMGLPMDEEGLMMMQHQQSKQATHAAPGISTIFSAGPSGSNSGVANMDDLNRLMSYQQQYYNVQSHPNQFSTLLMQPSPVMSLNSLPNPLPTTFSDRLWEWNPIPEPPNQEYSNMSFK 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0036 400 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 395 - -
Ssu6g0036 400 Gene3D NAC domain 59 200 IPR036093 GO:0003677|GO:0006355
Ssu6g0036 400 PANTHER NAC DOMAIN-CONTAINING PROTEIN 72-LIKE 24 395 - -
Ssu6g0036 400 ProSiteProfiles NAC domain profile. 50 197 IPR003441 GO:0003677|GO:0006355
Ssu6g0036 400 Pfam No apical meristem (NAM) protein 52 176 IPR003441 GO:0003677|GO:0006355
Ssu6g0036 400 MobiDBLite consensus disorder prediction 203 227 - -
Ssu6g0036 400 MobiDBLite consensus disorder prediction 1 39 - -
Ssu6g0036 400 MobiDBLite consensus disorder prediction 1 50 - -
Ssu6g0036 400 SUPERFAMILY NAC domain 50 196 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0036 Ssu-Chr6 824947 827088 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0036 49 223 NAC Transcription Factor Family AT2G02450 88.000 8.06e-114 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Ssu6g0036 NAM 4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0036 - - gmx:100792622 685.641