Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0033 ATGGAAAGTATACCGCACCCAATACCCAGAACAGTGGAAGAGGTTTTCACCGACTTTAAGGGCAGACGCACTGGTTTGATTAGGGCCCTCACTACCGACGTTGAAAAGTTTTATCAGCAGTGCGATCCTGAGAAGGAGAATTTGTGTCTATATGGGTTTCCAAATGAAACATGGGAAGTGAATTTGCCTGTTGAGGAAGTGCCTCCTGAACTTCCTGAGCCAGCATTAGGTATAAACTTTGCCAGGGACGGTATGCAAGAGAAGGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGCTACTTGCTGTTGCTTTCTATTTTGGCGCTCGCTTTGGATTTGGGAAGAATGAAAGGAAAAGGCTTTTTCAGATGATAAATGATCTGCCAACAATCTTCGAACTTGTGACAGGAAGTGCTAAGCAATCAAAGGATCAACCTGCTGCTCACAACAATGGTagcaaatttaaatcaagtggAAAGTCCCGTCAGTCTGAGTCTCAGGCCAAGGGAATGAAGATGCCTACACCACCCAAAGAAGAGGATGAGagtggagaagaagaagaagaagatgatgaacaAGGTGCAACATGTGGCGCTTGCGGTGATAATTATGGCACTGATGAATTCTGGATCTGTTGTGATATGTGTGAAAGATGGTTCCATggtaaatgtgttaaaattacTCCTGCTAAGGCTGAGCACATCAAGCAATACAAGTGCCCTAGCTGCAGTAACAAGAGGGTTAGAGTTTGA 759 0.4124 MESIPHPIPRTVEEVFTDFKGRRTGLIRALTTDVEKFYQQCDPEKENLCLYGFPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKNERKRLFQMINDLPTIFELVTGSAKQSKDQPAAHNNGSKFKSSGKSRQSESQAKGMKMPTPPKEEDESGEEEEEDDEQGATCGACGDNYGTDEFWICCDMCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRVRV 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0033 252 SMART PHD_3 198 246 IPR001965 -
Ssu6g0033 252 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Ssu6g0033 252 Pfam Alfin 11 138 IPR021998 GO:0006355|GO:0042393
Ssu6g0033 252 PANTHER CPG BINDING PROTEIN 8 252 IPR045104 GO:0006355|GO:0042393
Ssu6g0033 252 MobiDBLite consensus disorder prediction 141 198 - -
Ssu6g0033 252 ProSiteProfiles Zinc finger PHD-type profile. 196 248 IPR019787 -
Ssu6g0033 252 ProSitePatterns Zinc finger PHD-type signature. 199 245 IPR019786 -
Ssu6g0033 252 MobiDBLite consensus disorder prediction 182 197 - -
Ssu6g0033 252 MobiDBLite consensus disorder prediction 141 172 - -
Ssu6g0033 252 CDD PHD_AL_plant 199 248 IPR044104 -
Ssu6g0033 252 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR-RELATED 8 252 - -
Ssu6g0033 252 Pfam PHD-finger 199 248 IPR019787 -
Ssu6g0033 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 247 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0033 Ssu-Chr6 771993 784538 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0033 1 249 Alfin-like Transcription Factor Family AT1G14510 81.124 1.25e-133 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Ssu6g0033 Alfin 1.8e-69 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0033 - - gmx:100807826 478.789