Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0031 atgtcAGAAATGCGAGTGTCTGAGCTTCACTTGAAGAAGGAACTCACCCAAATCCGCAAGGCTGCTAGAGTTCTGAGAGATCCTGGCACTACATCTTCTTGGAAGTCACCACTCAGTTCCTCAAGATCCGTAGCTGCATGGAACAAGGAGGGTGCAAGTAGAAGGTTCAGCACCAATTCTCAACTTGCCAACAACAGcaatgagaaagagaaagagaaagagaaggagaagagggTGTTCTTGTACAATTGGAAGAACTATAAATCTTCGAGCGAGAAATACAACGAGGAGgacgaagaagaagatgatgacggCGGTGGATCTTCGTCGCTTCTTGGGGACAGGGACAGAGACAGAGACAGTTTGAGTGATGCTCGCAATGGTTGTGACTCGAAGAGTGATACTTACTTGCCTCctcctgctgctgctgctgctggcACTCGTTCTTCCATTTTCCGATGTGGGGATGCGAATCTTGTTTCCAGAAGAACAGTCCCCGTTAAGAAAAAGAGTAAGAAAAGTAACCCCccccattttgattttttagcaAAGTATCAGCACCATAGACAAACCAACCCAGGAAGAAATTTTGTGAGTTCTTCCAAGGCATTGCTAGAGGGGCCTCCTTTGCCTTTTTTTAGCAGGGATGACTCGGTTGACCACTCTGATGATACCGAGGATTACACTAATTCTGAGGGTGTGAGACCACTTTCGGGAACTTCTCCTTTGCTCCTGAAACTCAGGCAAAAGAATTGGTCTCGCTCTTCCTCTAAGTTTTTGAGAAGAAGCCGAAAAGAGGACTCTTCTTATTCTTATAGCACCCCTGCATTGTCAACTAGTTCTTACAATAGGTATGGTCACCGTTATCCCAGCACTCTTGGATCCTGGGATGGCACCACCACCTCGGTGAATGACGGCGATGGTGACGGCGACGATGAGATTGATGATCATTTGGATTTGCCTGGCCGCCAAGGATGTGGAATTCCTTGCTATTGGTCCAAGAGGACTCCTAAACATAGAGGCATGTGTGGTGGGAGCTGTTATTCCCCCTCACTGTCGGACACTTTAAGGAGGAAAGGGAGTAGCATGCTCTGTGGAAGTCAAACTATTTATCCAAGACACCAGAGATCGGTTTCGGCCTCCCACAAGAGGAGGCTTTCTTTGAGGAGTGCTCGGGGTGTTATTCCATTGCTCACCAACAGTGATATTAGAGAAGGGTCGTCTATAGGAACCGGTAGGAGTGATGATGAACTTTCCACAAACTTTGGGGAGCTTGATCTTGAGGGATTGAGCCGATTGGATGGAAGAAGGTGGTCATCAAGTTGTAGGAGTCAAGAAGGATTGGAGATTGTAGCTCTCAATGGGGAGGGGGAAGATGAGGGCACGCCAGAAAATAGTCGGAGTTTCAGCCAGAAGTATAAGCCTATGTTCTTTAGTGAACTGATTGGGCAGAATATTGTGGTTCAGTCACTTATCAACGCTGTTTCGAGGGGACGAATTGCTCCTGTCTATCTTTTTCAAGGTCCCCGTGGGACTGGTAAAACATCAACGGCTAGGATATTTGCTGCTGCCTTGAATTGTGCGAGTCCTGACGAGAATAAACCTTGTGGCTACTGCAGGGAATGTGCTGATTTCATTTCTGGTAAGAGCAGTGATCTACTGGAAGTTGATGGAACCAATAAGAGAGGAATTGATAAAGCTAGATATCTACTGAAAAGATTGTCAACTGGGTCATCATCAGCCTCCCCACAATATACAGTTTTTGTTATTGATGAGTGTCATTTGTTGCCCTCCAAGACATGGCTGGGATTTCTTAAGTTTCTGGAAGAACCACCCCCGCGAGTTGtattcatatttataacatCTGATCTTGACAATGTGCCACGAACAATACAATCTCGATGCCAGAAgtacctttttaataaaattaaagatgggGATATTGTGACCAGGTTGAGGAAAATATCTACTCAGGAGAACCTTGATGTTGAAGCAGATGCACTGGACCTCATTGCCATGAATGCAGATGGTTCACTTCGAGATGCAGAAACAATGTTAGAACAACTTAGTTTGCTGGGAAAGAGAATTACTACTTCTCTTGTCAATGAACTTGTGGGTGTTGTTTCAGATGAGAAATTATTGGAACTTTTGGAGTTAGCAATGTCATCAGATACCGTAGAGACAGTGAAAAGAGCCAGAGAATTGATGGACTCTGGAGTTGATCCAATGGTTTTGATGTCTCAACTAGCCGGCCTTATTATGGACATCATTGCTGGATCATATACAGTCATTGACACCAAACCTGATGATTCATTCTTTGGTGGACGGAGTTTGAATGAATCAGAGTTGGAGAGGTTAAAGAATGCTTTGAGGCTTCTCTCAGAGGCTGAAAAACAGTTAAGGACATCCAATGAACGCTCTACATGGTTTACAGCAACTCTATTGCAGCTTGGTTCTACACCTTCTCCAGATCTTACTCAGTCAAGCAGCAGTAGGAGGCAGAGCTGCAAGACAACTGAAGATGATCCATCAAGTGTTTCAAGAGATGTTACCTCTTGCACACACAAGTCAGACCCTCAATATATGCCTCGAAAGTCAGCGTATACTGCATCCCAGCAAAAAGCTCTAAATGATAATTCCAACCATCAAAAGGATATATCCTCTAAGGTTGATGGTTTCAGCTTGAAATCAAAGCCGTCAAACAGCCCGGTCATAGATGATGGCTCCACGGTGGTCTCATCTGAAGATCTTACGGTTGGGAATACAATGTTTAGGTGCATAGATTCAGGGAAGTTATGTGACATCTGGGTGCATTGTATCGAGAGGTGTCACTCTAAGACATTGAGGCAGCTGCTACATAATCATGGAAAGCTTGTGTCCATATGTGAAGTAGAAGGTGTATTGGTAGCATATGTTGCTTTTGGAGAGGCAGATATTAAAGTTAGGGCTGAGAGGTTTTTAAGAAGCATTACAAACTCCATGGAAATGGTTCTTAGGCGCAATGTGGAGGTCAGAATAATCCACTTGCCGGATGGTGAAGGTGAAAATCAGGTTAATCTAGTGGGTCTAAAGCAGGCAGAGTCAACAGTGGCTAGTGAGAAGGAACAAAGACAAGGTCATATGAATGGAATGGAGTCTTATTCTAGTTTGCCTCCTTTACTGGATGGAAACCTTCAATCTACCACTGCTTCATCAGATATTCTGGCTGAAGGAAATGGTGTGAGGGAGAGGAGACAGGATGATCCAATGCAGAGAATTGAATCCATCATTCGTGAGCAGAGGCTGGAAACTGCCTGGTTACGGGCCGTGGAAAAGGGGTCCCCTGGATCATTGAGTCGTTTGAGACCTGAGAAGAATCAAGTACTGCCACAGAATGGTGTAGACCCAATGGAGTCAATGGATTCAACAAGATTTTCCTCTCATCAGCATTGGGAAGATGACCCaaataatgaagtcaaagtttTGAGCCTTAAAAATGGAAGGGTACCACAGAAGGATCAGATTGGTAGAAAGTCAGATCGTTATCCCATGTCTCCAAGTTTATTGCATGACAACAGTTTAGCAACAATTTCTGGAAAAGACAATCTGGGATATGAATCAGGGTCGGGAGCTGGTGGTTGTGGGTTTTTATGTTGGAATAAATCCAAGCCTAGAAGGGTAATAAAGGTAAAAGGTGGCACCCCAGTTAGAGCGCGTAGAGCTGCAAGTTTTACATTGTTTGGTGACTGCGGTAAGCCTAAGAAAAGGGAGCGGAGAAGATAA 3762 0.4274 MSEMRVSELHLKKELTQIRKAARVLRDPGTTSSWKSPLSSSRSVAAWNKEGASRRFSTNSQLANNSNEKEKEKEKEKRVFLYNWKNYKSSSEKYNEEDEEEDDDGGGSSSLLGDRDRDRDSLSDARNGCDSKSDTYLPPPAAAAAGTRSSIFRCGDANLVSRRTVPVKKKSKKSNPPHFDFLAKYQHHRQTNPGRNFVSSSKALLEGPPLPFFSRDDSVDHSDDTEDYTNSEGVRPLSGTSPLLLKLRQKNWSRSSSKFLRRSRKEDSSYSYSTPALSTSSYNRYGHRYPSTLGSWDGTTTSVNDGDGDGDDEIDDHLDLPGRQGCGIPCYWSKRTPKHRGMCGGSCYSPSLSDTLRRKGSSMLCGSQTIYPRHQRSVSASHKRRLSLRSARGVIPLLTNSDIREGSSIGTGRSDDELSTNFGELDLEGLSRLDGRRWSSSCRSQEGLEIVALNGEGEDEGTPENSRSFSQKYKPMFFSELIGQNIVVQSLINAVSRGRIAPVYLFQGPRGTGKTSTARIFAAALNCASPDENKPCGYCRECADFISGKSSDLLEVDGTNKRGIDKARYLLKRLSTGSSSASPQYTVFVIDECHLLPSKTWLGFLKFLEEPPPRVVFIFITSDLDNVPRTIQSRCQKYLFNKIKDGDIVTRLRKISTQENLDVEADALDLIAMNADGSLRDAETMLEQLSLLGKRITTSLVNELVGVVSDEKLLELLELAMSSDTVETVKRARELMDSGVDPMVLMSQLAGLIMDIIAGSYTVIDTKPDDSFFGGRSLNESELERLKNALRLLSEAEKQLRTSNERSTWFTATLLQLGSTPSPDLTQSSSSRRQSCKTTEDDPSSVSRDVTSCTHKSDPQYMPRKSAYTASQQKALNDNSNHQKDISSKVDGFSLKSKPSNSPVIDDGSTVVSSEDLTVGNTMFRCIDSGKLCDIWVHCIERCHSKTLRQLLHNHGKLVSICEVEGVLVAYVAFGEADIKVRAERFLRSITNSMEMVLRRNVEVRIIHLPDGEGENQVNLVGLKQAESTVASEKEQRQGHMNGMESYSSLPPLLDGNLQSTTASSDILAEGNGVRERRQDDPMQRIESIIREQRLETAWLRAVEKGSPGSLSRLRPEKNQVLPQNGVDPMESMDSTRFSSHQHWEDDPNNEVKVLSLKNGRVPQKDQIGRKSDRYPMSPSLLHDNSLATISGKDNLGYESGSGAGGCGFLCWNKSKPRRVIKVKGGTPVRARRAASFTLFGDCGKPKKRERRR 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0031 1253 MobiDBLite consensus disorder prediction 209 240 - -
Ssu6g0031 1253 MobiDBLite consensus disorder prediction 22 76 - -
Ssu6g0031 1253 SUPERFAMILY post-AAA+ oligomerization domain-like 714 815 IPR008921 GO:0003677|GO:0006260
Ssu6g0031 1253 MobiDBLite consensus disorder prediction 29 65 - -
Ssu6g0031 1253 MobiDBLite consensus disorder prediction 108 127 - -
Ssu6g0031 1253 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 190 1191 - -
Ssu6g0031 1253 Coils Coil 776 806 - -
Ssu6g0031 1253 CDD AAA 482 640 - -
Ssu6g0031 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 492 690 IPR027417 -
Ssu6g0031 1253 SMART AAA_5 500 650 IPR003593 -
Ssu6g0031 1253 Gene3D - 460 641 IPR027417 -
Ssu6g0031 1253 MobiDBLite consensus disorder prediction 820 834 - -
Ssu6g0031 1253 Coils Coil 59 79 - -
Ssu6g0031 1253 MobiDBLite consensus disorder prediction 845 907 - -
Ssu6g0031 1253 PANTHER PROTEIN STICHEL-LIKE 1 190 1191 - -
Ssu6g0031 1253 MobiDBLite consensus disorder prediction 216 230 - -
Ssu6g0031 1253 Pfam DNA polymerase III, delta subunit 483 643 - -
Ssu6g0031 1253 MobiDBLite consensus disorder prediction 90 148 - -
Ssu6g0031 1253 Gene3D - 645 706 - -
Ssu6g0031 1253 MobiDBLite consensus disorder prediction 820 907 - -
Ssu6g0031 1253 Pfam DNA polymerase III subunits gamma and tau domain III 697 762 IPR022754 GO:0003887
Ssu6g0031 1253 CDD HLD_clamp_pol_III_gamma_tau 643 706 IPR045085 -
Ssu6g0031 1253 TIGRFAM dnaX_nterm: DNA polymerase III, subunit gamma and tau 468 817 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0031 Ssu-Chr6 706442 713482 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0031 464 758 Core DNA Replication Machinery Family AT1G21690 24.342 5.22e-15 76.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0031 - - gmx:100791561 2132.07