Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0028 ATGGAACTTTCGAGCCAAGAAGGAGAAATTCCAATCCCAATAAACAGCGCTAGTGCTTATGGTGGGGGACATGGTAATGGGCATGGGCATGGGCTGATGATTCATCATGAGCCTCCTCCTCCACATAACCCCAATATTATTATATCCTCCACGCCCACGGCACCTTCAAATGGCACATCTGCTATGCAGCAGGAGGATCATGGACACGGATCGTACAAGAAAGTGGTGAGGTACAGAGAATGCCTGAAGAACCATGCAGCTGCCATGGGAGGGAATGCCACTGATGGGTGTGGTGAGTTCATGCCAAGTGGAGAAGAAGGCACCATAGAGGCACTCAACTGCTCCGCCTGCCATTGCCACAGAAACTTCCACAGAAAGGAAGTGGAAGGTGAGCCCTCTTCGTGTGACTTCCACCGGACCACCAGGAGACTCATTCTAGGCCCTCACAAGAACATCCTCCCTCCCGAGGCTCTTGGCTACCCTACAGGTAACATCCTCCCTTCTAGAACCGTCCCACCTCACCACATGATAATGCCCTACAACATTGGACACCTCCCTTCAGAATCCGATGAACAAGAAGATGCTCCTGCTGCTGGGAATCTGATGCAGCCTAGTCGACCCACCCAGCTAGTCAAGAAAAGGTTCAGGACAAAGTTCACCCAGGAGCAGAAGGAGAAAATGCTCAACTTTGCTGACAAGGTGGGCTGGAAAATCCAGAAGCAAGAGGAGTCTGTCGTCCAACAGTTCTGCCAAGAGATTGGGGTTAAGAGAAGAGTGCTCAAGGTTTGGATGCATAACAACAAGCACAGTCTCGCCAAAAAAAATCCCCCAACTGCACCAGCTTAA 846 0.5083 MELSSQEGEIPIPINSASAYGGGHGNGHGHGLMIHHEPPPPHNPNIIISSTPTAPSNGTSAMQQEDHGHGSYKKVVRYRECLKNHAAAMGGNATDGCGEFMPSGEEGTIEALNCSACHCHRNFHRKEVEGEPSSCDFHRTTRRLILGPHKNILPPEALGYPTGNILPSRTVPPHHMIMPYNIGHLPSESDEQEDAPAAGNLMQPSRPTQLVKKRFRTKFTQEQKEKMLNFADKVGWKIQKQEESVVQQFCQEIGVKRRVLKVWMHNNKHSLAKKNPPTAPA 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0028 281 MobiDBLite consensus disorder prediction 1 32 - -
Ssu6g0028 281 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 77 128 IPR006456 -
Ssu6g0028 281 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 78 127 IPR006456 -
Ssu6g0028 281 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 5 274 - -
Ssu6g0028 281 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 5 274 - -
Ssu6g0028 281 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 212 268 IPR006455 -
Ssu6g0028 281 Gene3D - 200 274 - -
Ssu6g0028 281 SUPERFAMILY Homeodomain-like 200 273 IPR009057 -
Ssu6g0028 281 Pfam ZF-HD protein dimerisation region 76 128 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0028 Ssu-Chr6 657560 658405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0028 1 275 ZF-HD Transcription Factor Family AT1G14440 47.883 6.01e-77 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu6g0028 ZF-HD_dimer 1.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0028 - - gmx:100805652 433.335