Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0020 ATGGCATTTACTGCTTCAAATCACAAATCTGGCGGAATTCATTCAGGGGCAACCAATGATGATTTATACAAGGAATTGTGGCATGCCTGTGCTGGTCCTCTTGTCACTCTCCCTCGTGAAGGGGAGCGAGTTTATTACTTTCCACAAGGTCACATGGAGCAGcTTGAGGCATCTATGTATGAGGGATTAGAGCAGCAGATGCCTTCCTTCAATCTGCCctctaaaatattatgtaaagtgGTCAATGTTCATCTTCGGGCTGAATCTGAAACAGATGAAGTATATGCACAGATAACTTTGCTTCCTGAAGCAGATCAAAGTGAGGTGACCAGCCCTGATGATCCTCTGGCTGAATCTCTGAGGGTCAAGGTCCATTCATTTTGCAAGACACTTACTGCTTCTGACACCAGTACCCATGGGGGTTTCTCTGTTCTTCGTAGACATGCAGACGATTGTCTGCCTCCACTGGATATGTCTCAGCAGCCACCATGGCAAGAATTGGTAGCAACTGATTTACATGGGAATGAATGGCATTTTAGACATATTTTTCGAGGGCAACCCAAGCGCCACTTACTTACCACTGGGTGGAGTGTCTTTGTCAGTTCCAAAAAATTAGTGGCTGGTGATGCCTTTATATTCTTAAGGGGTGAAAATGGAGAGCTGCGAGTTGGGGTTAGGAGGCTCATGAGACAGCAGAGCAATGTGCCTTCTTCTGTTATATCTAGTCACAGTATGCATCTTGGTGTTCTGGCCACTGCATCTCATGCCATTGCCACTGGAACACTGTTTTCTGTGTTTTACAAGCCCAGAACAAGCCGGTCAGAGTTTATTGTGAGTGTCAACAAGTACCTGGAAGCTCAGAGTCATAAACTCTCTGTTGGGATGAGATTCAAAATGAGATTTGAGGGTGATGAAATTCCTGAAAGAAGGTTCAGTGGTACAATTGTGGGTGTTGGAGATAACAAATCATCAGTCTGGCCTGATTCTGAGTGGCGATCATTAAAGGTGCAATGGGATGAACCGTCATCAATTTTGCGTCCTGATAGAGTTTCTTCATGGGACTTGGAGCCACTTGTGTCTACCAATCCTGCAAACTCACAGCCAACCCAAAGAAACAAGAGGGCACGGCCTCTCATTCTACCATCTACAATACCTGATTCTTCTATGCAAGGCATATGGAAATCCCCAGTTGAATCTTCATCTTTCTCTTATTGTGACCCCCAACATGGACGTGGCCTCTATCCATCACCCAAGTTCAATTCTTCTGCAACTAACTTTCTTGGTTTTAGTGGGAATACCTCTGTGGGACCTCCTTCCAACAAATCAATATATTGGTCTAATAGGATGGAAAATTCCATGGAATCTATTTCAGCTATAGCCCTTAAAGAAGCTGGAGAGAAGAGACAAGGCACTGGAAATGGCTGTAGACTCTTTGGGATCCAGCTACTTGAGAATTCTAATGCAGAAGGAAGTCTACAAACAGTCACTTTGTCAGGAAAGGCGGGTGATGATAGGTCTGTTCCATCTTTAGATGCTGAATCTGATCAGCATTCTGAACCGTCAAATGCAAATCGATCTGATATTCCTTCAGTAAGTTGTGATGCTGAAAAATCATGCCTGCAGTCTCACCAGGAGTCGCAAAGCAAGCAAATAAGGAGCTGTACAAAGgtTCACATGCAAGGAATGGCTGTTGGGAGAGCTGTGGATTTAACACGATTTGATGGATATGAGGATCTGCTCAGGAAATTGGAAGAGATGTTTGACATCAAGGCTGAGCTCTGTCGGCCCCTAAAAAAATGGCAGGTTGTCTACACTGATAATGAAGatgatatgatgatggttgGAGATGATCCATGGCATGAGTTCTGTAGTGTTGTGAGGAAAATTTTCATCTACACTGCAGAGGAGGTGCAGAAGCTTTCGCCCAAAATAGGACTTCCAatcaatgaaaaagataaaccAAGCAAGCTAGATGCTGAAGCAATGGTCAATCCTGAAGACCAGTCGTCTACTGTGGGGCTCAGTTGCTAG 2031 0.4338 MAFTASNHKSGGIHSGATNDDLYKELWHACAGPLVTLPREGERVYYFPQGHMEQLEASMYEGLEQQMPSFNLPSKILCKVVNVHLRAESETDEVYAQITLLPEADQSEVTSPDDPLAESLRVKVHSFCKTLTASDTSTHGGFSVLRRHADDCLPPLDMSQQPPWQELVATDLHGNEWHFRHIFRGQPKRHLLTTGWSVFVSSKKLVAGDAFIFLRGENGELRVGVRRLMRQQSNVPSSVISSHSMHLGVLATASHAIATGTLFSVFYKPRTSRSEFIVSVNKYLEAQSHKLSVGMRFKMRFEGDEIPERRFSGTIVGVGDNKSSVWPDSEWRSLKVQWDEPSSILRPDRVSSWDLEPLVSTNPANSQPTQRNKRARPLILPSTIPDSSMQGIWKSPVESSSFSYCDPQHGRGLYPSPKFNSSATNFLGFSGNTSVGPPSNKSIYWSNRMENSMESISAIALKEAGEKRQGTGNGCRLFGIQLLENSNAEGSLQTVTLSGKAGDDRSVPSLDAESDQHSEPSNANRSDIPSVSCDAEKSCLQSHQESQSKQIRSCTKVHMQGMAVGRAVDLTRFDGYEDLLRKLEEMFDIKAELCRPLKKWQVVYTDNEDDMMMVGDDPWHEFCSVVRKIFIYTAEEVQKLSPKIGLPINEKDKPSKLDAEAMVNPEDQSSTVGLSC 676
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0020 676 Gene3D - 290 363 - -
Ssu6g0020 676 SMART B3_2 127 229 IPR003340 GO:0003677
Ssu6g0020 676 Pfam AUX/IAA family 543 588 IPR033389 -
Ssu6g0020 676 Pfam AUX/IAA family 600 642 IPR033389 -
Ssu6g0020 676 SUPERFAMILY CAD & PB1 domains 554 629 - -
Ssu6g0020 676 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Ssu6g0020 676 Gene3D - 547 641 - -
Ssu6g0020 676 Pfam Auxin response factor 253 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Ssu6g0020 676 Pfam B3 DNA binding domain 127 227 IPR003340 GO:0003677
Ssu6g0020 676 MobiDBLite consensus disorder prediction 498 530 - -
Ssu6g0020 676 CDD B3_DNA 125 227 IPR003340 GO:0003677
Ssu6g0020 676 MobiDBLite consensus disorder prediction 513 530 - -
Ssu6g0020 676 Gene3D - 124 229 IPR015300 -
Ssu6g0020 676 ProSiteProfiles PB1 domain profile. 552 645 IPR000270 GO:0005515
Ssu6g0020 676 PANTHER AUXIN RESPONSE FACTOR 9 10 653 - -
Ssu6g0020 676 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 653 IPR044835 GO:0003677|GO:0006355|GO:0009725
Ssu6g0020 676 SUPERFAMILY DNA-binding pseudobarrel domain 124 256 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0020 Ssu-Chr6 505038 513270 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0020 3 675 B3 DNA Binding Superfamily AT1G59750 69.185 0.0 919
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Ssu6g0020 B3 1.2e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0020 K14486 - gmx:100815450 1256.12