Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu6g0014 ATGGCGCTGATCCTGCATGCtgggaaaacaaacaaaaattcttACAAGACACTCATCGCAGCGGAGTACGCTGGTGTGCAAGTTGAATTAGCCCCAAATTTTGAGATGGGTGTCTCCAATAAAACTCCTGAATTTCTCAAGATGAATCCTATTGGCAAGGTTCCTGTGTTGGAAACACCCAATGGTCCAGTATTTGAGAGCAATGCCATTGCTCGCTATGTTTCTCGGCTGAAGGGTGATAACATTTTGTATGGATCTTCTTTGATTGAATATGCCCGCATTGAACAATGGATTGATTTTGCATCATTGGAGATTGATGCTAATATTATCAAGTGGTATGCCCCAAGAATTGGACGAGCACCATACCTTCCTCCAGCCGAGGAGGCTGCAATTTCTGCACTGAAGAGAGCTTTGGGTGCTTTGAACATCCACCTTGCCTCCAACACTTACCTGGTTGGGCATTCTGTGACCCTGGCTGACATCATAATGACATGCAATTTGTATTTGGGTTTCACAAACATCCTGGTTAAGAGCTTCACCTCTGAGTTTCCTCATGTTGAGAGATACTTTTGGACCTTGGTCAATCAGCCGAACTTCCGAAAGATATTTGGGCAGGTCAAGCAGACTGAAGCTATTCCACCTGTTCAATCTGCGAAGCAGCCTTCCCAGCCAAAAGAATCTAAGCCCAAGGTAAAAGATGAACCAAAGAAAGAGGCTAACAAGGAGCCAGAAAAGCCCAAAGAAGAAGCAGAAGAGGAGGCACCCAAGCCCAAACCCAAGAATCCCCTTGATCTTCTCCCTCCAAGTACGATGATACTAGATGAATGGAAAAGACTGTACTCAAACACTAAAACCAACTTCAGGGAGGTTGCTATCAAAGGGTTTTGGGACATGTATGATCCTGAGGGATACTCTCTCTGGTTTTGTGATTACAAGTACAATGATGAGAATACTGTTTCCTTTGTGACATTGAACAAGGTTAGTGGATTTCTTCAGCGGATGGATTTGGCTCGCAAGTATGCATTTGGAAAGATGCTTGTGATTGGATCAGATCCTCCATTTAAGGTGAAGGGGCTGTGGGTTTTCCGTGGGCAAGAAATCCCACGATTTGTGATTGATGAATGCTATGACATGGAGCTCTACGAATGGACTAAGGTTGACATCTCTGATGAAGCTCAAAAGGAGCGTGTCAATCAGATGATTGAAGATTGTGAACCTTTTGAGGGCGAGGCTCTTTTGGATGCTAAGTGCTTTAAGTGA 1260 0.4365 MALILHAGKTNKNSYKTLIAAEYAGVQVELAPNFEMGVSNKTPEFLKMNPIGKVPVLETPNGPVFESNAIARYVSRLKGDNILYGSSLIEYARIEQWIDFASLEIDANIIKWYAPRIGRAPYLPPAEEAAISALKRALGALNIHLASNTYLVGHSVTLADIIMTCNLYLGFTNILVKSFTSEFPHVERYFWTLVNQPNFRKIFGQVKQTEAIPPVQSAKQPSQPKESKPKVKDEPKKEANKEPEKPKEEAEEEAPKPKPKNPLDLLPPSTMILDEWKRLYSNTKTNFREVAIKGFWDMYDPEGYSLWFCDYKYNDENTVSFVTLNKVSGFLQRMDLARKYAFGKMLVIGSDPPFKVKGLWVFRGQEIPRFVIDECYDMELYEWTKVDISDEAQKERVNQMIEDCEPFEGEALLDAKCFK 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu6g0014 419 Pfam Glutathione S-transferase, N-terminal domain 3 76 IPR004045 -
Ssu6g0014 419 MobiDBLite consensus disorder prediction 212 267 - -
Ssu6g0014 419 Pfam Glutathione S-transferase, C-terminal domain 128 197 IPR004046 -
Ssu6g0014 419 CDD GST_N_EF1Bgamma 5 77 - -
Ssu6g0014 419 SUPERFAMILY GST C-terminal domain-like 73 214 IPR036282 -
Ssu6g0014 419 Gene3D Translation elongation factor EF1B, gamma chain, conserved domain 259 419 IPR036433 GO:0003746|GO:0006414
Ssu6g0014 419 SMART EF1G_2 258 366 IPR001662 GO:0003746|GO:0006414
Ssu6g0014 419 CDD GST_C_EF1Bgamma_like 90 210 - -
Ssu6g0014 419 SFLD Main (cytGST) 5 190 - -
Ssu6g0014 419 Gene3D - 80 215 - -
Ssu6g0014 419 PANTHER ELONGATION FACTOR 1-GAMMA 1-RELATED 1 419 IPR044628 GO:0004364
Ssu6g0014 419 SUPERFAMILY eEF1-gamma domain 259 419 IPR036433 GO:0003746|GO:0006414
Ssu6g0014 419 SUPERFAMILY Thioredoxin-like 2 81 IPR036249 -
Ssu6g0014 419 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 87 215 IPR010987 -
Ssu6g0014 419 Pfam Elongation factor 1 gamma, conserved domain 258 366 IPR001662 GO:0003746|GO:0006414
Ssu6g0014 419 PANTHER - 1 419 - -
Ssu6g0014 419 MobiDBLite consensus disorder prediction 225 259 - -
Ssu6g0014 419 SFLD Glutathione Transferase (cytosolic) 5 190 IPR040079 -
Ssu6g0014 419 ProSiteProfiles Elongation factor 1 (EF-1) gamma C-terminal domain profile. 259 419 IPR001662 GO:0003746|GO:0006414
Ssu6g0014 419 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 1 82 IPR004045 -
Ssu6g0014 419 Gene3D Glutaredoxin 1 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu6g0014 Ssu-Chr6 389131 391608 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu6g0014 1 419 Eukaryotic Initiation Factors Gene Family AT1G57720 76.247 0.0 640
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu6g0014 K03233 - gmx:547637 745.732