Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3560 ATGGCCTTCTTGATGACCTTCTTTGCCTCTACCGACAACTTTGGCGAGGAAGACGATAGGCCCCACAAGGGGTTCAAGCAGAGCAGGCCCATGAATTTGGTCATTGTTCGTTCCTTGGTCTTCATTGTCCTTCTCTGGTTGAGCCCTTTCGGtttttatggGAAACAACATTGTGGTCCAAGTAATATCTTTGCATCTCTATCAAGTATTAGAACTATATTGGTTGGTGACTGGCCTCCTGAAAGGTTGGTGCATGTTGTTGAAAGGCTTCAATGCCGCGCTCATAGTGAAAATGGAGTTGCAATGTGGGTATCAAGATCCTTTATAATTGGAAATCAGTTCCTTGTATGTGGAGATGGCATTTCAGTAGAGGGCTTGCCAAACTTCAAAGATcttgaaattgatatttttagcaAATGA 420 0.4119 MAFLMTFFASTDNFGEEDDRPHKGFKQSRPMNLVIVRSLVFIVLLWLSPFGFYGKQHCGPSNIFASLSSIRTILVGDWPPERLVHVVERLQCRAHSENGVAMWVSRSFIIGNQFLVCGDGISVEGLPNFKDLEIDIFSK 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3560 139 PANTHER - 48 139 - -
Ssu5g3560 139 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 48 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3560 Ssu-Chr5 86970595 86972260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3560 48 139 MAP Kinase Kinase Gene Family AT5G40440 53.261 1.33e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3560 K20607 - gmx:100784935 158.688