Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3556 ATGAACTTAAATACCATTCTACAGGTAAAGAAGAAGGCTGCAAGCATCGCGGTTGCTGGGATCATCTTTCCCATGGTGATGGCACCGTGCTTGTATGCTATACATCGAAAATTTTACGGCAGTAATGTAATTCGCCTTGAAGAAAGTACAAGTAATGCTTATTTACTTTGGACTTTAGTTCTCACTGTTACAGGTTTTCCTGTCGTAGCTCACACACTTTCTGAGCTCAAGCTCCTTTATACTGGTCTTGGCAAAGCCGCTTTAACAGCAGCCATGATCAGTGACACCTATGGTTGGATTCTTTTCACTTTACTGGTTCCATTTTCAATTAATGGTAAAAGAGCCGTCTACTCGGTGCTAAGCACGATATTATTCATTGTTGTCTGCATCTTTGTGGTACGTCCAATCATTCTACGGTTGATTGAGCGCAAGACAGACAAGGAGGAGTGGGATGACAACCAATTACTCTTTGTGGTGATGGGGGTTTTAGCTTGTTCATACATTACAGATATTCTTGGCACACATGGCATTGTTGGGGCTTTCGTATACGGATTAATTTTACCTCATGGCAGATTTGCTGACTTGGTGATGTCAATTTCAGATGATTTTGCTGGCGGGTTTCTGGCACCGCTCTTCTTTAGTGGCACTGGAATGAGACTTATATTGTCCGCGATTTTCTACCAGGCGAATTGGGCCTTAACACTGCTGATTATACTCTTGTTGTGTGTTCCAAAGATTTTAAGCACTTTATTTGCAACTTTCTTCTTTGGTCTGCGCACTCGAGATGGTTTAGCCCTAGGCTTGCTTCTGAATACCAAGGGCGCCATGGCACTGATAATGCTAAACATTGCTTGGGATCGAGGGATTTTTTCTTTACCTACCTATGCCGTTATTACTTCGGCTGTTCTTCTAATGACTGTAGTAGTGTCTCCCATCATCAACGCCATCTACAAACCAAGAAAGAGATTTGAGCAGAACAAGCTAAAGACTATACAGAAACTAAGAGTTGATGCAGAGCTTCGAATTCTAGCATGTGTCCACAATGCTCGCCAAGCCGCAGGCATGATCAGCATAATTGAAACTTTTAATGCCACCAGACTTTCCCCCATACATGTTTTTGCCCTGTACCTTATTGAACTTACTGGACGTGCTGCTGCCCTTGTTGCTTCACATATAGAGAAGCCTAGTAGCCAATCCGGAGTACAAAATCTCACCAGATCACAGGCAGAGTTAGAAAGCATTGCCAATACCTTTGATGCATTTGGAGAGGCATATGACACTGTCAGAATCGAGACCTTAAATGTGGTGTCGGCCTATGCAACCATTCATGAGGACATATACAGCTCAGCAAATGAGAAACGCACAAGCTTAATTCTCCTTCCATTCCACAAACAATTAAGTTCTGAGGGTGCACTTGAAGTAACCAGTGTTGTATACAAAGATATAAACCAAAATGTAATGCAACGTGCATCTTGCTCTGTGGGAATCTTTGTTGATCGTGATTTTGGGTCAATTCCCAAAATGAACCTCCGTATTCTTATGCTCTTTGTTGGGGGCCCTGACGATCGTGAAGCCTTAGCTGTTGCATGGAGGATGGCTGGACATCCGGGAATCCGACTATCAGTGGTTCGGATTCTTTTGTTTGATGAAGCGGCGGAAGTGGATACTTCAATTCACGCTGAAGCACAAGGGATATTATCTGCTGTAATGGATAGTGAGAAGCAGAAAGAGTTAGATGACGAATATGTAAGTTCATTTAGACTTACGGCAGTGAACAATGAGGATTCTATATCCTACTCAGAGATTGATGTCCATACTGGTGAAGATATTCCCGCAGTCCTCAATGAGCTAGAAAAAATTGGCTGCGATTTATACATAGTTGGACAAGGGAATTGTAGGAACTCTCGGGTCTTCTCAAATTTGTTAGAATGGTGTGATTGCTCAGAACTTGGAGTTATAGGGGATATTTTGGCGTCAAACAATTTTGGTTCGCGCTCATCTTTGCTAGTTGTTCAACAATATGGGTATGGAGGAATGGTTTTTGGAAAGAATCTAAACCATGTGGCCACCAATAACGATGGCTTTGAATCGCTTTTCGTGAAGACAGAATAA 2112 0.4242 MNLNTILQVKKKAASIAVAGIIFPMVMAPCLYAIHRKFYGSNVIRLEESTSNAYLLWTLVLTVTGFPVVAHTLSELKLLYTGLGKAALTAAMISDTYGWILFTLLVPFSINGKRAVYSVLSTILFIVVCIFVVRPIILRLIERKTDKEEWDDNQLLFVVMGVLACSYITDILGTHGIVGAFVYGLILPHGRFADLVMSISDDFAGGFLAPLFFSGTGMRLILSAIFYQANWALTLLIILLLCVPKILSTLFATFFFGLRTRDGLALGLLLNTKGAMALIMLNIAWDRGIFSLPTYAVITSAVLLMTVVVSPIINAIYKPRKRFEQNKLKTIQKLRVDAELRILACVHNARQAAGMISIIETFNATRLSPIHVFALYLIELTGRAAALVASHIEKPSSQSGVQNLTRSQAELESIANTFDAFGEAYDTVRIETLNVVSAYATIHEDIYSSANEKRTSLILLPFHKQLSSEGALEVTSVVYKDINQNVMQRASCSVGIFVDRDFGSIPKMNLRILMLFVGGPDDREALAVAWRMAGHPGIRLSVVRILLFDEAAEVDTSIHAEAQGILSAVMDSEKQKELDDEYVSSFRLTAVNNEDSISYSEIDVHTGEDIPAVLNELEKIGCDLYIVGQGNCRNSRVFSNLLEWCDCSELGVIGDILASNNFGSRSSLLVVQQYGYGGMVFGKNLNHVATNNDGFESLFVKTE 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3556 703 Pfam Sodium/hydrogen exchanger family 1 313 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Ssu5g3556 703 Gene3D - 1 327 IPR038770 -
Ssu5g3556 703 Gene3D - 341 641 - -
Ssu5g3556 703 PANTHER CATION/H + ANTIPORTER 1 688 - -
Ssu5g3556 703 PANTHER CATION/H+ EXCHANGER 3 1 688 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3556 Ssu-Chr5 86846909 86849146 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3556 1 674 Antiporter Super Family AT2G13620 37.664 4.03e-165 493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3556 - - gmx:100804266 1211.44