Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3555 atgttggcTTACTTACAATACAACTCGCTCTGTGTTGGTCTTCCGCTTTTCATTCTCCTTCTAAGTCGCGCTTTATCCCTTCTCTCCTGCCAAATCTTCCTCCCTTCTCTTTACCTTGTGATTGACATGTCTTCTTCCGCCGGCGGCGTTACCTCCAACGCTCCTCTGCAATATTTCTGCTACCAGTGCAACCGCACCGTCTCCATTACTCCTTCCTCTGATCTCGTGTGCCCCAATTGCAACGGTGGCTTCATCGAGGAAGTGGAGAGTCCAATTCCAAGCATTCCCCATCCATTCTCTTTCACGTACGAGTTTGGTGGCGACGATCTCCCCACCCTCTTCGGCGGTCGATCGTCCCCTTTCGCAGACGCTGACGCCTTCAACCCTTTGGTGTTCCTTCAGAATTACATTCAAACCCTGAGAGCCGGTGGCGCTAATGTTCAGTTCGTAATCGACAACTCTGGGGACCCCAGTGGAGCACTTCGTCTCCCCACAAATCTCAACCTTGGCGATTACTTCTTCGGGCCGGGTCTCGAGCAATTGATTCAGCATCTTGCGGAGAACGACCCTAACCGGTATGGGACTCCCCCAGCCTCCAAGTCTGCCATCGAGGGGCTCCCAAACATCTCGATTACGGAGGAATTGTTGGCTTCGGATTCATCACAGTGTGCGGTGTGTAAAGACACGTTCGAGCTCCGGGAATTGGCCAGGCAGATGCCCTGTAAACACATTTATCATTCTGATTGCATCCTGCCTTGGTTGGAATTGCACAACTCTTGTCCTGTGTGTCGGTATGAGTTACCAACTGATGATCCTGACTACGAGCAAAGGGCTCGAGGGTCTCGCGGCCAATCTACAGCTGCTGCTTCTTCTGATGATGCAGACACCTCGCAGTCACCCAGGGAGCGGAGCTTTAGGGTTTCTTTGCCCTGGCCCTTTAGGCAGTTTTCTTCCATTGCCGAGACAAGCAATAACAACGGAAACAATACTGGGGAATCAGATCATAATATTGAGTCAGAAACCAGGCAAGAAGATCTTGATTGA 1044 0.5086 MLAYLQYNSLCVGLPLFILLLSRALSLLSCQIFLPSLYLVIDMSSSAGGVTSNAPLQYFCYQCNRTVSITPSSDLVCPNCNGGFIEEVESPIPSIPHPFSFTYEFGGDDLPTLFGGRSSPFADADAFNPLVFLQNYIQTLRAGGANVQFVIDNSGDPSGALRLPTNLNLGDYFFGPGLEQLIQHLAENDPNRYGTPPASKSAIEGLPNISITEELLASDSSQCAVCKDTFELRELARQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQRARGSRGQSTAAASSDDADTSQSPRERSFRVSLPWPFRQFSSIAETSNNNGNNTGESDHNIESETRQEDLD 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3555 347 MobiDBLite consensus disorder prediction 274 347 - -
Ssu5g3555 347 SUPERFAMILY RING/U-box 203 270 - -
Ssu5g3555 347 MobiDBLite consensus disorder prediction 315 334 - -
Ssu5g3555 347 Pfam zinc-ribbon 57 87 IPR039525 GO:0061630
Ssu5g3555 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 316 - -
Ssu5g3555 347 SMART ring_2 223 263 IPR001841 -
Ssu5g3555 347 CDD RING-H2_RNF126_like 222 264 - -
Ssu5g3555 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 270 IPR013083 -
Ssu5g3555 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 48 94 - -
Ssu5g3555 347 Pfam Ring finger domain 222 264 IPR001841 -
Ssu5g3555 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 48 94 - -
Ssu5g3555 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 108 316 - -
Ssu5g3555 347 MobiDBLite consensus disorder prediction 279 295 - -
Ssu5g3555 347 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3555 Ssu-Chr5 86818423 86819466 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3555 164 279 C3H Transcription Factor Family AT5G01980 50.000 3.86e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3555 - K11982 lang:109333167 441.039
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3555 5 86818423 86819466 Ssu5g3555 5 86818423 86819466 ECH