Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3550 ATGAGGTGGTACAGCGAGGTCTTCTGTGTGTCCGGGTCAAGGTCAGGTGCATATGCACTCGCTCCTATAGTTTCTGCTTCCATTCGCTACACAAGTCTAGTGTCGCAATTCCAAAAGCctctcttcaaattcaaattcaaattcagcaACTCCTCTTCTCTCGCTCTTACCCATCGTAAGCTGGTACCCGCTGCACTAACACAGCCCTCAAGTTCAAGGGACGATTTTGATTTTGTGGTCATCAATTTCTACCATTTTGTGTTCATCGAAGACCCACAAGCTGAAGTCGCCAAACACCGTTCTTTCTTGGATTTGGAGGGTCTCGACATCAATGGAAGAGTTTATTTGAATGAACAAGGGATTAATGCGCAGTATAGTGGGCCATCAAAAGATGCTCTGGCTTATGTCAACTGGTTAAGGGAGGATAACAGGTTTTCTGACATCTTGGTTCAGACATCTCCATCAGAAAATGGACATACCTTTCCAACATTGAGGTTGCGTTATAAGCCTTCATTAGTACAGTTTGAAGGTGGTATATCACATCTTTCATTGCTTGATCCTTCAATGCGAGCAATTCCTTTATCACCTTCAGAATGGAGAGAGAGATTGGAAGCAATCAATAAAACTGATCTTACAGCAATAGATTATCCTAACAGAAATTACATTCTATTGGATGTGAGAAATGGTTATGAGTGGGATATTGGACATTTTCGTGGGGCTCAGCGACCTAGTGTGGACTGCTTTAGGAGCACTTCATTTGGTTTGTCTCAGGAAGAGATCACTGCTTCAGATCCTTTATCAAATGTGGATAAAGAAAAAGCAAACATATTGATGTATTGCACTGGAGGGATTCGCTGTGATGTATATTCTACAATACTAagGCAGCAGGGATTTCAGAATTTGTATACTCTGAAGGGAGGTGTTTCTCACTATTTAAAGAATGAAGGTCCTGCAGAATGGGTAggaaatttatttgtatttgacTCCCGTTTGTCTCTCCCTCCTATTTACTATACCGGGGCCACAACTGAAGCAGAGTCGACTCCAGTTTCTGGAGATGATAAGTTTGCAAAATGCTACGTGTGTAGTTTGGAAGTCAGTGAATTGAGACATAGGAACTGTGCAAATCTTGATTGTAATTTGCTTTTTCTATGCTGCAGAAAATGTGTAAAGGATCTAAGAGGTTGTTGTTGTTTGACTTGCACTGCTGCTCCTCGGCTTAGACCTATTTTAAATGGAATGCAGAGATACAAAAAATGGCACATCTATCGGGATATGGATTTgcaaaggaaaatgaaaatttcaacaTGA 1311 0.3928 MRWYSEVFCVSGSRSGAYALAPIVSASIRYTSLVSQFQKPLFKFKFKFSNSSSLALTHRKLVPAALTQPSSSRDDFDFVVINFYHFVFIEDPQAEVAKHRSFLDLEGLDINGRVYLNEQGINAQYSGPSKDALAYVNWLREDNRFSDILVQTSPSENGHTFPTLRLRYKPSLVQFEGGISHLSLLDPSMRAIPLSPSEWRERLEAINKTDLTAIDYPNRNYILLDVRNGYEWDIGHFRGAQRPSVDCFRSTSFGLSQEEITASDPLSNVDKEKANILMYCTGGIRCDVYSTILRQQGFQNLYTLKGGVSHYLKNEGPAEWVGNLFVFDSRLSLPPIYYTGATTEAESTPVSGDDKFAKCYVCSLEVSELRHRNCANLDCNLLFLCCRKCVKDLRGCCCLTCTAAPRLRPILNGMQRYKKWHIYRDMDLQRKMKIST 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3550 436 Pfam Rhodanese-like domain 219 312 IPR001763 -
Ssu5g3550 436 Gene3D - 186 345 IPR036873 -
Ssu5g3550 436 CDD RHOD_YceA 194 313 - -
Ssu5g3550 436 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 71 431 IPR020936 -
Ssu5g3550 436 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 71 431 - -
Ssu5g3550 436 Pfam Rhodanase C-terminal 322 402 IPR022111 -
Ssu5g3550 436 Pfam UPF0176 acylphosphatase like domain 79 170 IPR040503 -
Ssu5g3550 436 ProSiteProfiles Rhodanese domain profile. 217 320 IPR001763 -
Ssu5g3550 436 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 190 334 IPR036873 -
Ssu5g3550 436 SMART rhod_4 206 317 IPR001763 -
Ssu5g3550 436 Gene3D - 67 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3550 Ssu-Chr5 86755087 86768831 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3550 77 429 Sulfurtransferasese or Rhodanese AT1G17850 67.033 0.0 517
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3550 - - gmx:100814358 769.615
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3550 5 86755087 86768831 Ssu5g3550 5 86755087 86768831 ECH