Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu5g3546 atggagtACGGGAGCGGAGGCGGTGGGTCGCAGTCCCCAGGGGAGCAGGATGGTTCGGATTCCCAGGAGAGGAGAAAGCGTTATCATCGTCATACTGCCAACCAGATTCAGAGGCTTGAGTCAATGTTCAAAGAGTGCCCCCATCCAGATGAGAAGCAGAGATTGCAGTTAAGCAGAGAGTTAGGCCTGGCCCCAAGGCAGATCAAATTTTGGTTCCAGAACAGGAGGACCCAGATGAAGGCCCAGCACGAAAGAGCTGACAACTGTGCTCTTCGAGCTGACAATGACAAGATACGTTGCGAGAACATAGCCATCAGAGAGGCCTTGAAGAATGTTATCTGCCCTTCTTGTGGTGGCCCTCCTCTCAATGACGATTCTTATTTTGATGACCAAAAGTTGCGATTGGAGAACGCCCACCTCAAAGAAGAACTTGACAGAGTATCTAGCATAGCTGCCAAGTACATTGGAAGACCAATTTCCCAACTCCCGCCGGTTCAGCCTATTCATATATCGTCTCTGGATTTGTCCATGGCGAGTTTCGGAAACCAAGGGATGGTTGGTCCTGGACCTGCTTCTTCTTCCCTTAATCTTGATCTTCTCCCTGCAGGGACTTCCTCATCCGTGCCAAATTTGCCGTATCAGCCTCCTTGCCTTTCGGACATGGACAAGTCCCTCATGTCAGACATTGCTTCCAATGCCATGGAAGAATTACTCAGGCTCTTGCAGACCAACGAACCCTTGTGGCTGAAGTCAAACATCGACGGGAGAGATGTTCTTAGTTGTGATACCTATGAAAGAATGTTCCCCAAGCCTAACAGTCGTCCCAAGAATCCTAATGTTCGCGTTGAAGCATCCCGAGATTCTGGAGTTGTATTCATGAATAGTTTAGCTTTGGCTGACATGTTTATGGACCCAAACAAGTGGACGGAACTTTTTCCCACTATTGTCTCGGCGGCAAGGACTATTCAGGTCATATCTTCGGGGATGATGGGTGGTTGCAGTGGTTCTTTGCAATTGatgTATGAAGAGTTGCAAGTGCTTTCTCCGCTTGTTTCTACTCGGGAGTTCTACTTCCTGCGTTACTGTCAGCAAATTGAGCAGGGCACATGGGCAGTAGTGGACGTTTCTTATGATTTCCCTCAAGATAGCCACTTTGCTCCTCAATTTCGGTCTCATCGTCGTCCTTCTGGTTGCTTGATCCAGGACATGCCTGACGGGCATTCCAAGATTACTTGGGTCGAACACGTAGAGATTGAAGATAAAACTCTGCCTCATCGGCTTTACAGAAATCTTATTTATAGTGGGATGGCATTCGGAGCTGAAAGATGGCTTGCTACCCTCCAGAGGATGTGTGAAAGACTTACTTATCTAATGGTTACAAGCAATCCTACCCGGGATAATCTTGGAGGAgTAATTTCATCTCCTGAGGGCAAGAGAAGCATGATGAAACTAGCTCATAGGATGGTCACCAATTTCTGTGCCAGCATTAGCACATCAAGTGGCCACCGATGGACCACGCTCTCTGCTGGGTTGAATGAAATTGGAGTCAGAGTCACTGTCCACAAAAACACAGATCCCGGACAACCAAATGGTGTGGTGCTGAGTGCCGCCACTACCATTTGGCTTCCCACCCCTCCACACACTGTCTTCAATTTCTTCaaggatgaaagaaaaagacCTCAGTGGGATGTTCTTTCCAACGGTAATGTCGTGCAAGAGGTTGCCCACATAGCAAATGGTTCACACCCTGGTAACAGTATATCAGTTCTTCGAGCCTTCAACACGAGTCAGAACAATATGTTAATACTCCAAGAGAGCTGCATAGATTCCTCTGGTTCACTTGTGGTTTATTGCCCAGTTGATATGCCATCCATCAACATAGCAATGAGTGGTGAAGACCCTTCGTACATTCCCCTACTACCAAATGGATTTACCATTTTGCCTGATGGGCAGCCTGACCAGGAAGCAGGAGATGGAGCATCAACCAGTTCAAACGCAAACAGGAACATAGGAAGGTTTGGGGGTTCACTAGTTACAGTTGCATTCCAGATTCTAGTGAGCAGCTTGCCATCTGCCAAGCTGAATATGGAGTCAGTGACAACTGTCAATAATCTTATTGGCTCCACAATCCAGCAAATAAAGGCTTCATTGAGTTGTCCTACTTAG 2166 0.4686 MEYGSGGGGSQSPGEQDGSDSQERRKRYHRHTANQIQRLESMFKECPHPDEKQRLQLSRELGLAPRQIKFWFQNRRTQMKAQHERADNCALRADNDKIRCENIAIREALKNVICPSCGGPPLNDDSYFDDQKLRLENAHLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMASFGNQGMVGPGPASSSLNLDLLPAGTSSSVPNLPYQPPCLSDMDKSLMSDIASNAMEELLRLLQTNEPLWLKSNIDGRDVLSCDTYERMFPKPNSRPKNPNVRVEASRDSGVVFMNSLALADMFMDPNKWTELFPTIVSAARTIQVISSGMMGGCSGSLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGTWAVVDVSYDFPQDSHFAPQFRSHRRPSGCLIQDMPDGHSKITWVEHVEIEDKTLPHRLYRNLIYSGMAFGAERWLATLQRMCERLTYLMVTSNPTRDNLGGVISSPEGKRSMMKLAHRMVTNFCASISTSSGHRWTTLSAGLNEIGVRVTVHKNTDPGQPNGVVLSAATTIWLPTPPHTVFNFFKDERKRPQWDVLSNGNVVQEVAHIANGSHPGNSISVLRAFNTSQNNMLILQESCIDSSGSLVVYCPVDMPSINIAMSGEDPSYIPLLPNGFTILPDGQPDQEAGDGASTSSNANRNIGRFGGSLVTVAFQILVSSLPSAKLNMESVTTVNNLIGSTIQQIKASLSCPT 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu5g3546 721 Pfam Homeodomain 25 80 IPR001356 GO:0003677
Ssu5g3546 721 SMART HOX_1 23 86 IPR001356 GO:0003677
Ssu5g3546 721 CDD START_ArGLABRA2_like 223 452 - -
Ssu5g3546 721 ProSiteProfiles START domain profile. 219 456 IPR002913 GO:0008289
Ssu5g3546 721 MobiDBLite consensus disorder prediction 1 30 - -
Ssu5g3546 721 ProSitePatterns 'Homeobox' domain signature. 57 80 IPR017970 GO:0000981|GO:0006355
Ssu5g3546 721 ProSiteProfiles 'Homeobox' domain profile. 22 82 IPR001356 GO:0003677
Ssu5g3546 721 CDD homeodomain 24 83 IPR001356 GO:0003677
Ssu5g3546 721 SUPERFAMILY Homeodomain-like 7 82 IPR009057 -
Ssu5g3546 721 Pfam START domain 229 453 IPR002913 GO:0008289
Ssu5g3546 721 SMART START_1 228 453 IPR002913 GO:0008289
Ssu5g3546 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 5 719 IPR042160 -
Ssu5g3546 721 Gene3D - 11 95 - -
Ssu5g3546 721 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 5 719 - -
Ssu5g3546 721 SUPERFAMILY Bet v1-like 474 714 - -
Ssu5g3546 721 Gene3D - 227 453 IPR023393 -
Ssu5g3546 721 SUPERFAMILY Bet v1-like 220 454 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu5g3546 Ssu-Chr5 86677026 86680081 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu5g3546 20 721 Homeobox Transcription Factor Family AT1G73360 65.912 0.0 931
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Ssu5g3546 START 8.6e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu5g3546 K09338 - gmx:100796042 1317.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g3546 5 86677026 86680081 Ssu5g3546 5 86677026 86680081 ECH